Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 3.6e-112 408.3 210 100.0
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.3e-65 252.3 207 65.2
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 1.0e-58 230.7 207 62.8
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 2.7e-51 206.1 179 63.7
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 2.3e-50 203.0 186 57.5
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 5.1e-50 201.8 198 56.1
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 4.3e-49 198.7 207 51.7
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 4.3e-49 198.7 207 52.2
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 3.6e-48 195.7 203 53.7
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 1.8e-47 193.4 171 57.9
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 2.4e-47 193.0 195 52.3
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 2.4e-47 193.0 216 50.0
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 3.1e-47 192.6 211 49.3
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 5.3e-47 191.8 210 49.5
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 1.5e-46 190.3 212 49.5
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 2.0e-46 189.9 203 50.2
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 2.6e-46 189.5 199 52.3
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 7.6e-46 188.0 194 52.6
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 7.6e-46 188.0 194 52.6
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 7.6e-46 188.0 195 50.8
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 9.9e-46 187.6 196 51.0
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 9.9e-46 187.6 169 52.7
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 2.2e-45 186.4 189 49.7
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 6.4e-45 184.9 184 54.3
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 8.4e-45 184.5 199 52.3
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.9e-44 183.3 181 53.6
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 1.9e-44 183.3 191 52.9
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 2.4e-44 183.0 159 57.9
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 3.2e-44 182.6 203 50.7
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.2e-44 182.6 181 53.6
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 9.3e-44 181.0 198 52.5
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 9.3e-44 181.0 215 49.3
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.6e-43 180.3 186 53.8
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 2.7e-43 179.5 166 54.8
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 3.5e-43 179.1 205 48.8
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 6.0e-43 178.3 169 50.9
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 6.0e-43 178.3 200 51.0
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 1.3e-42 177.2 203 48.8
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 1.8e-42 176.8 166 56.0
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 3.9e-42 175.6 204 49.0
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 5.1e-42 175.3 197 50.3
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.1e-41 174.1 164 54.9
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.9e-41 173.3 163 54.0
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 2.5e-41 172.9 159 56.0
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 3.3e-41 172.6 163 54.0
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 3.3e-41 172.6 182 50.5
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.3e-40 170.6 189 51.3
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.6e-40 170.2 207 47.8
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 1.6e-40 170.2 212 47.6
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 4.8e-40 168.7 198 46.5
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 6.2e-40 168.3 195 50.8
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 1.1e-39 167.5 194 51.0
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.4e-39 167.2 124 71.0
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 2.4e-39 166.4 170 51.2
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 3.1e-39 166.0 172 52.3
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 4.0e-39 165.6 197 47.7
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 5.3e-39 165.2 196 44.9
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 5.3e-39 165.2 200 48.5
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 9.0e-39 164.5 207 47.3
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 9.0e-39 164.5 183 49.2
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 2.6e-38 162.9 192 48.4
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 4.5e-38 162.2 153 52.3
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 5.8e-38 161.8 192 46.9
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 5.8e-38 161.8 191 49.7
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 7.6e-38 161.4 200 45.5
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 4.9e-37 158.7 169 47.9
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 6.5e-37 158.3 203 45.3
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 8.4e-37 157.9 167 54.5
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 1.9e-36 156.8 180 46.1
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 4.2e-36 155.6 192 45.3
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 7.1e-36 154.8 185 47.0
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 1.6e-35 153.7 165 49.7
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 3.5e-35 152.5 208 44.2
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 6.0e-35 151.8 159 54.1
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 1.0e-34 151.0 180 45.0
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 1.3e-34 150.6 174 51.7
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 2.3e-34 149.8 199 45.2
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 3.9e-34 149.1 163 50.3
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 3.9e-34 149.1 257 38.9
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 5.1e-34 148.7 158 48.1
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 1.1e-33 147.5 157 51.0
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 1.9e-33 146.7 190 46.3
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 3.3e-33 146.0 162 48.8
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 5.7e-33 145.2 188 46.8
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 4.8e-32 142.1 169 47.3
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 1.4e-31 140.6 173 47.4
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 3.1e-31 139.4 133 51.9
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 5.3e-31 138.7 147 51.0
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.2e-30 137.5 192 42.7
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 4.5e-30 135.6 179 45.8
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 7.6e-30 134.8 184 42.9
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 6.5e-29 131.7 157 51.6
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 8.4e-29 131.3 144 50.7
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 5.5e-28 128.6 280 33.9
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 7.1e-28 128.3 168 44.6
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 8.7e-26 121.3 128 53.1
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 1.5e-25 120.6 134 48.5
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 9.7e-25 117.9 185 43.2
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 2.4e-23 113.2 200 37.0
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 2.9e-21 106.3 143 42.0
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 1.6e-19 100.5 141 40.4
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 3.9e-18 95.9 143 42.0
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 1.5e-17 94.0 104 49.0
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 1.9e-12 77.0 96 45.8
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 2.5e-12 76.6 114 41.2
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 2.5e-12 76.6 114 41.2
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 4.2e-12 75.9 158 30.4
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 3.7e-08 62.8 119 33.6
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 4.8e-08 62.4 74 50.0
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 5.3e-07 58.9 133 30.1
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 7.0e-07 58.5 77 40.3


User provided reference genes

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