Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 8.8e-182 640.2 332 100.0
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.8e-119 432.6 324 70.7
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.5e-115 419.5 332 68.4
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 4.6e-114 415.2 328 67.1
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.2e-111 406.4 339 66.4
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 6.3e-111 404.8 330 63.6
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 1.1e-110 404.1 328 64.9
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.8e-110 403.3 330 63.6
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 2.4e-110 402.9 328 64.3
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 6.9e-110 401.4 322 64.0
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 9.0e-110 401.0 322 64.0
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.5e-109 400.2 328 60.7
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 1.3e-108 397.1 328 63.7
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.3e-108 397.1 328 63.7
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 2.2e-108 396.4 332 62.0
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 2.9e-108 396.0 328 63.4
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 1.1e-107 394.0 329 63.5
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.4e-107 393.7 328 63.4
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 1.9e-107 393.3 329 63.8
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 3.2e-107 392.5 330 63.0
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 1.2e-106 390.6 313 67.4
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.6e-106 390.2 329 62.9
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.6e-106 390.2 328 63.1
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 1.6e-106 390.2 330 62.4
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 2.7e-106 389.4 324 60.5
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 2.7e-106 389.4 332 62.3
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 3.6e-106 389.0 333 63.1
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 6.1e-106 388.3 328 62.8
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 1.0e-105 387.5 331 60.1
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 1.0e-105 387.5 322 63.4
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 1.0e-105 387.5 328 61.9
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 1.8e-105 386.7 328 61.9
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 2.3e-105 386.3 328 61.9
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 3.0e-105 386.0 330 62.7
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 5.1e-105 385.2 321 62.6
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.1e-104 384.0 328 62.8
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 1.5e-104 383.6 329 61.7
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.9e-104 383.3 320 62.8
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 4.3e-104 382.1 328 62.2
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 5.7e-104 381.7 322 61.8
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 5.7e-104 381.7 324 59.6
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 7.4e-104 381.3 328 61.0
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 9.7e-104 380.9 333 61.6
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 1.3e-103 380.6 334 61.4
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 2.2e-103 379.8 332 61.1
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 2.2e-103 379.8 329 58.7
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 3.7e-103 379.0 331 58.6
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 8.2e-103 377.9 327 62.1
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.4e-102 377.1 324 59.6
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 9.1e-102 374.4 329 60.2
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 4.5e-101 372.1 322 60.9
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 5.9e-101 371.7 328 61.0
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 7.7e-101 371.3 328 58.8
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 1.3e-100 370.5 327 59.6
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.2e-100 369.8 328 61.0
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 2.2e-100 369.8 327 59.9
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 2.9e-100 369.4 315 62.2
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 5.0e-100 368.6 325 61.5
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.1e-99 367.5 358 58.1
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 3.2e-99 365.9 329 59.6
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 4.2e-99 365.5 320 60.3
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 5.5e-99 365.2 388 54.4
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 1.2e-98 364.0 328 58.8
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.2e-98 364.0 328 58.8
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 1.8e-97 360.1 336 57.7
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 6.7e-97 358.2 329 59.6
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 9.7e-96 354.4 322 59.6
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 1.7e-95 353.6 309 59.5
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 1.7e-95 353.6 328 58.8
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 8.2e-95 351.3 276 68.1
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 1.8e-94 350.1 372 52.7
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 3.1e-94 349.4 384 51.6
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 9.1e-94 347.8 323 59.1
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 1.2e-93 347.4 320 55.9
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.3e-92 344.0 320 55.9
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 2.9e-92 342.8 322 55.3
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 2.5e-91 339.7 332 55.1
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 2.5e-91 339.7 349 55.0
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 3.2e-91 339.3 328 57.3
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 7.2e-91 338.2 322 55.6
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 7.2e-91 338.2 328 55.2
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 7.2e-91 338.2 328 55.8
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 9.4e-91 337.8 330 55.5
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 9.4e-91 337.8 328 55.5
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.2e-90 337.4 322 57.5
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 1.6e-90 337.0 328 54.9
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 2.7e-90 336.3 330 54.8
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 2.7e-90 336.3 330 54.8
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 2.7e-90 336.3 330 54.8
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 2.7e-90 336.3 329 55.0
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 6.1e-90 335.1 312 57.7
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 1.4e-89 334.0 329 55.0
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 1.8e-89 333.6 328 57.6
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 3.9e-89 332.4 330 54.5
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 8.8e-89 331.3 330 54.8
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 8.8e-89 331.3 322 55.6
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 1.1e-88 330.9 332 55.7
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 1.1e-88 330.9 332 55.7
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 2.6e-88 329.7 328 54.0
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 5.7e-88 328.6 332 54.2
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.2e-85 320.9 339 54.3
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 4.2e-83 312.4 322 53.1
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 5.5e-83 312.0 266 60.2
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 9.4e-83 311.2 322 52.5
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 2.0e-80 303.5 330 56.1
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 9.1e-78 294.7 312 53.2
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 3.5e-77 292.7 322 51.6
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.9e-75 287.0 205 70.7
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.1e-74 283.5 325 49.8
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 2.1e-74 283.5 273 56.4
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 6.1e-74 282.0 365 49.3
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 4.2e-67 259.2 278 51.4
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 9.8e-64 248.1 327 43.7
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 3.7e-63 246.1 311 46.9
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 1.2e-61 241.1 325 45.5
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.6e-61 240.7 328 45.1
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 1.1e-54 218.0 328 41.2
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 3.7e-47 193.0 206 50.0
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.6e-42 177.6 105 85.7
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 8.9e-41 171.8 179 48.0
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 7.5e-40 168.7 110 77.3
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.4e-38 163.7 260 42.7
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 5.4e-38 162.5 186 50.5
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 5.1e-36 156.0 190 48.4
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 6.8e-33 145.6 108 67.6
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 1.1e-30 138.3 135 57.0
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 1.4e-25 121.3 265 33.2
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.6e-21 107.8 100 56.0
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.5e-19 101.3 92 56.5
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 9.6e-19 98.6 119 50.4
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 1.7e-15 87.8 345 29.0
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 2.2e-15 87.4 83 54.2
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 2.3e-12 77.4 46 80.4
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 2.3e-12 77.4 46 80.4
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 2.3e-12 77.4 46 80.4
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 3.9e-12 76.6 49 75.5
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.5e-11 74.7 82 48.8
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 2.5e-11 73.9 67 55.2
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 3.3e-11 73.6 45 77.8
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 3.3e-11 73.6 54 66.7
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 4.3e-11 73.2 63 57.1
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 9.6e-11 72.0 53 64.2
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.8e-07 60.1 99 35.4
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 2.5e-06 57.4 51 60.8


User provided reference genes

Program Settings