Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.2e-191 672.9 332 100.0
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 2.2e-116 422.9 292 70.5
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 2.5e-115 419.5 306 67.3
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 6.0e-114 414.8 288 70.1
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 6.0e-114 414.8 288 70.1
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 7.9e-114 414.5 303 67.0
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 3.0e-113 412.5 337 62.6
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.9e-112 409.8 287 71.4
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 3.3e-112 409.1 334 62.0
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.3e-111 407.1 274 70.1
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.6e-111 406.8 289 68.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 2.2e-111 406.4 298 67.8
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 2.2e-111 406.4 297 67.0
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.8e-111 406.0 296 69.3
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 2.8e-111 406.0 306 66.0
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 3.7e-111 405.6 270 68.1
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 4.8e-111 405.2 331 61.3
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 6.3e-111 404.8 295 66.8
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 6.3e-111 404.8 330 61.8
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 6.3e-111 404.8 293 66.9
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.4e-110 403.7 292 67.8
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 2.4e-110 402.9 290 66.9
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.1e-110 402.5 280 69.6
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 9.0e-110 401.0 308 64.3
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.5e-109 400.2 290 66.6
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.5e-109 400.2 333 60.4
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.5e-109 400.2 293 65.9
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.5e-109 400.2 295 66.1
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 3.4e-109 399.1 338 60.7
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 3.4e-109 399.1 312 64.4
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 3.4e-109 399.1 289 66.8
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 4.5e-109 398.7 282 66.7
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 1.0e-108 397.5 335 60.9
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.3e-108 397.1 295 65.8
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.7e-108 396.7 312 64.1
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.7e-108 396.7 319 63.3
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.7e-108 396.7 287 66.9
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 1.7e-108 396.7 292 66.1
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 3.8e-108 395.6 311 64.0
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 3.8e-108 395.6 291 66.0
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 8.5e-108 394.4 337 60.2
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.9e-107 393.3 298 65.1
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.9e-107 393.3 291 66.3
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.5e-107 392.9 268 67.9
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.2e-107 392.5 325 59.7
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 4.2e-107 392.1 276 67.4
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 4.2e-107 392.1 336 60.4
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 5.5e-107 391.7 329 63.8
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 5.5e-107 391.7 264 68.2
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.2e-106 390.6 343 59.5
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 3.6e-106 389.0 276 67.0
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 4.6e-106 388.7 307 62.9
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 4.6e-106 388.7 295 64.1
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 7.9e-106 387.9 283 66.4
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.8e-105 386.7 289 63.7
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 2.3e-105 386.3 324 61.1
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 3.0e-105 386.0 307 61.9
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 5.1e-105 385.2 285 67.0
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.7e-105 384.4 298 63.8
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.1e-104 384.0 340 57.4
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.7e-104 381.7 292 63.4
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 7.4e-104 381.3 291 62.9
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 9.7e-104 380.9 333 58.6
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 9.7e-104 380.9 296 62.5
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.3e-103 380.6 337 58.2
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 1.7e-103 380.2 346 57.8
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.7e-103 380.2 325 59.1
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 2.2e-103 379.8 339 56.6
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 2.8e-103 379.4 288 64.9
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 2.8e-103 379.4 281 66.9
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 3.7e-103 379.0 317 58.4
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.7e-103 379.0 266 68.0
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 6.3e-103 378.3 300 61.7
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 1.4e-102 377.1 320 59.4
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.4e-102 377.1 320 59.4
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.4e-102 377.1 261 69.0
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.8e-102 376.7 318 58.8
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.1e-102 375.6 319 59.6
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 6.9e-102 374.8 294 61.9
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 7.7e-101 371.3 260 68.8
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.0e-100 370.9 319 59.6
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.7e-100 370.2 317 58.4
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.7e-100 370.2 291 63.9
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 2.2e-100 369.8 339 56.3
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 2.2e-100 369.8 330 55.8
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 5.0e-100 368.6 298 63.1
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 8.5e-100 367.9 277 65.7
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 3.2e-99 365.9 342 54.7
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 4.2e-99 365.5 318 58.2
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 5.5e-99 365.2 280 65.7
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.2e-98 364.0 306 61.8
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 2.7e-98 362.8 325 57.5
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.7e-98 362.8 276 63.0
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 3.6e-98 362.5 285 61.8
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.7e-98 362.1 314 57.6
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 7.9e-98 361.3 298 61.4
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 7.9e-98 361.3 257 67.3
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.4e-97 360.5 309 60.5
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.4e-97 360.5 279 62.0
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 2.3e-97 359.8 323 57.3
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 2.3e-97 359.8 291 59.1
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 5.1e-97 358.6 355 55.5
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 1.1e-96 357.5 306 63.1
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 1.5e-96 357.1 268 64.9
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.3e-96 355.9 320 57.5
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 4.1e-94 349.0 330 55.2
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 5.0e-92 342.0 322 56.8
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 5.0e-92 342.0 330 56.4
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.1e-91 340.9 332 53.9
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.4e-91 340.5 322 56.8
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 7.2e-91 338.2 330 52.4
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.6e-90 335.9 289 59.9
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.6e-90 335.9 347 53.6
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.4e-89 334.0 325 55.1
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.1e-88 330.9 345 54.8
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 2.8e-87 326.2 278 60.1
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 6.3e-87 325.1 227 67.8
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 3.1e-86 322.8 248 64.1
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 4.1e-86 322.4 278 59.0
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 3.5e-85 319.3 311 54.0
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 3.6e-82 309.3 262 55.0
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 8.8e-81 304.7 269 57.6
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 2.6e-80 303.1 351 49.3
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.4e-80 302.4 285 56.1
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 9.7e-80 301.2 265 52.1
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.3e-79 300.8 285 55.8
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 3.7e-79 299.3 299 53.5
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 8.2e-79 298.1 339 52.8
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.4e-78 297.4 333 51.7
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 9.1e-78 294.7 329 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 5.0e-76 288.9 282 51.8
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.0e-76 288.9 291 53.6
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 7.2e-75 285.0 307 49.8
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 3.4e-72 276.2 312 48.7
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 1.0e-68 264.6 282 46.8
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 6.5e-68 261.9 215 61.9
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 1.1e-67 261.2 261 50.6
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 3.0e-65 253.1 182 65.4
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.2e-64 251.1 179 69.8
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.6e-59 232.3 231 53.7
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.8e-57 227.3 169 65.7
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 6.8e-57 225.3 166 65.7
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 2.6e-56 223.4 167 65.9
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 4.4e-56 222.6 167 64.7
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 7.5e-56 221.9 165 65.5
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 9.8e-56 221.5 170 61.8
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.7e-55 220.7 178 63.5
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.2e-55 220.3 178 62.9
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 2.9e-55 219.9 212 56.6
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 6.4e-55 218.8 165 64.8
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 5.4e-54 215.7 159 67.9
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 7.3e-51 205.3 140 70.0
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.3e-47 194.5 259 39.8
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 2.2e-47 193.7 499 29.5
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 3.7e-47 193.0 188 55.9
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.2e-42 177.9 306 37.6
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 2.8e-42 176.8 358 31.6
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 1.8e-41 174.1 121 66.1
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.8e-41 174.1 114 65.8
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 3.1e-41 173.3 109 69.7
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.7e-39 167.5 105 71.4
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.2e-39 167.2 117 64.1
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 7.8e-37 158.7 106 68.9
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 1.4e-33 147.9 96 68.8
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.1e-33 146.7 110 58.2
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.0e-33 146.4 96 68.8
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.0e-33 146.4 97 68.0
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 3.4e-32 143.3 92 70.7
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.5e-29 133.3 173 43.9
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 3.3e-27 126.7 125 52.0
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.4e-25 121.3 90 61.1
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.6e-24 117.1 99 55.6
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.8e-18 97.1 67 61.2
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 3.6e-18 96.7 60 75.0
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.9e-15 86.3 50 76.0
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 1.9e-14 84.3 51 78.4
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 7.1e-14 82.4 72 48.6
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 4.8e-10 69.7 53 60.4
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 4.0e-09 66.6 51 60.8


User provided reference genes

Program Settings