Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 1.9e-124 449.1 222 100.0
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 2.2e-83 312.8 230 71.7
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 6.3e-83 311.2 231 69.7
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 6.3e-83 311.2 231 69.7
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 1.4e-82 310.1 233 70.4
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 4.1e-82 308.5 231 69.3
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 5.3e-82 308.1 230 71.3
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 2.0e-81 306.2 229 69.0
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 1.7e-80 303.1 232 68.1
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 2.9e-80 302.4 230 67.8
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 3.8e-80 302.0 230 68.3
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 5.0e-80 301.6 230 69.6
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 6.5e-80 301.2 230 69.6
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.1e-79 300.4 230 68.3
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 1.5e-79 300.1 231 67.1
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.9e-79 299.7 234 67.5
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 1.9e-79 299.7 232 66.8
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 2.5e-79 299.3 231 67.5
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 3.2e-79 298.9 232 66.8
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 3.2e-79 298.9 231 66.2
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 5.5e-79 298.1 261 62.8
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 7.2e-79 297.7 230 68.3
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 7.2e-79 297.7 226 68.1
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 9.4e-79 297.4 226 68.6
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 9.4e-79 297.4 230 67.4
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.7e-78 295.8 234 66.2
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.6e-78 295.4 231 67.5
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 3.6e-78 295.4 231 67.5
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 4.7e-78 295.0 230 67.0
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 4.7e-78 295.0 230 67.0
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 4.7e-78 295.0 227 66.5
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 6.1e-78 294.7 231 66.7
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 6.1e-78 294.7 233 65.7
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 8.0e-78 294.3 226 67.7
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 8.0e-78 294.3 231 66.7
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.0e-77 293.9 226 67.7
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.0e-77 293.9 231 68.0
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 1.4e-77 293.5 229 65.9
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 1.4e-77 293.5 232 65.9
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 2.3e-77 292.7 229 66.4
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 2.3e-77 292.7 227 67.0
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 3.0e-77 292.4 225 68.9
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 5.2e-77 291.6 232 65.5
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 5.2e-77 291.6 227 66.5
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 6.7e-77 291.2 227 66.5
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 8.8e-77 290.8 229 64.6
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 1.1e-76 290.4 231 66.7
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 1.5e-76 290.0 227 66.5
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.0e-76 289.7 225 68.4
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 2.0e-76 289.7 231 64.9
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.0e-76 289.7 227 65.6
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 2.0e-76 289.7 228 65.8
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 2.6e-76 289.3 226 66.4
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.4e-76 288.5 227 67.0
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 5.7e-76 288.1 229 65.1
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 7.5e-76 287.7 229 64.2
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 9.7e-76 287.3 227 66.5
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 9.7e-76 287.3 230 65.7
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 9.7e-76 287.3 230 63.9
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 1.3e-75 287.0 233 63.9
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 1.3e-75 287.0 231 65.8
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 2.2e-75 286.2 229 65.1
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 2.8e-75 285.8 230 64.8
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 2.8e-75 285.8 230 64.8
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 2.8e-75 285.8 228 64.9
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.8e-75 285.8 227 66.5
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 2.8e-75 285.8 226 67.3
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 3.7e-75 285.4 230 65.7
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 3.7e-75 285.4 225 67.6
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 3.7e-75 285.4 229 65.5
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 6.3e-75 284.6 229 64.6
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 8.2e-75 284.3 225 67.1
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 8.2e-75 284.3 225 67.1
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 1.1e-74 283.9 230 64.3
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 1.4e-74 283.5 226 64.2
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 1.8e-74 283.1 230 63.9
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 1.8e-74 283.1 231 64.5
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.8e-74 283.1 233 64.4
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 1.8e-74 283.1 229 64.6
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 2.4e-74 282.7 229 64.2
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 2.4e-74 282.7 212 72.2
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 3.1e-74 282.3 235 64.3
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 3.1e-74 282.3 227 65.6
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 4.1e-74 282.0 229 64.2
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 5.3e-74 281.6 227 65.2
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 5.3e-74 281.6 226 64.6
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 7.0e-74 281.2 229 63.8
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 7.0e-74 281.2 229 63.8
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 9.1e-74 280.8 229 64.2
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 3.5e-73 278.9 231 65.4
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 3.5e-73 278.9 229 62.9
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 3.5e-73 278.9 229 62.9
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 3.5e-73 278.9 229 62.9
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 3.5e-73 278.9 220 66.8
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 4.5e-73 278.5 230 63.0
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 4.5e-73 278.5 229 63.8
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 5.9e-73 278.1 233 62.7
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 7.7e-73 277.7 229 62.9
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 7.7e-73 277.7 227 63.9
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 7.7e-73 277.7 228 64.5
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 1.0e-72 277.3 233 62.2
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 1.0e-72 277.3 229 62.4
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 1.3e-72 276.9 229 63.8
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 2.2e-72 276.2 231 63.6
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 2.2e-72 276.2 229 62.0
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 3.8e-72 275.4 228 62.7
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 3.8e-72 275.4 230 64.3
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 8.5e-72 274.2 229 61.6
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 8.5e-72 274.2 232 62.5
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 1.5e-71 273.5 231 65.4
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 7.2e-71 271.2 229 62.9
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 9.4e-71 270.8 229 61.6
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 2.7e-70 269.2 234 63.2
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 3.6e-70 268.9 231 60.6
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 3.4e-68 262.3 242 59.9
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 6.3e-67 258.1 213 65.3
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 6.3e-67 258.1 230 61.7
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 8.3e-67 257.7 314 49.7
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 3.1e-66 255.8 210 65.7
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.1e-66 255.4 217 62.7
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 4.1e-66 255.4 180 72.2
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 9.1e-66 254.2 212 61.8
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 9.1e-66 254.2 257 56.0
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 3.5e-65 252.3 212 63.2
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 5.9e-65 251.5 226 60.2
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 5.9e-65 251.5 231 58.9
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 7.7e-65 251.1 228 59.6
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 7.7e-65 251.1 213 63.4
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 6.5e-64 248.1 220 62.7
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 1.5e-63 246.9 218 63.3
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 1.2e-62 243.8 216 58.8
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 2.7e-62 242.7 158 75.3
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 1.8e-61 240.0 229 57.2
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 4.4e-60 235.3 229 54.1
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 1.4e-58 230.3 159 71.1
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 4.1e-58 228.8 225 56.4
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 1.2e-57 227.3 229 58.1
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.0e-57 226.5 170 69.4
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 5.9e-57 224.9 155 72.3
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 5.9e-57 224.9 157 71.3
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 2.9e-56 222.6 223 57.4
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 3.8e-56 222.2 160 72.5
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 1.9e-55 219.9 238 50.4
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.4e-53 213.8 181 65.2
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 2.3e-53 213.0 210 56.2
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 5.2e-53 211.8 240 51.2
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 3.4e-52 209.1 154 66.2
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 8.3e-51 204.5 133 74.4
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 1.6e-49 200.3 183 57.4
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 4.6e-49 198.7 159 62.3
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 1.7e-48 196.8 181 58.0
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 1.5e-47 193.7 237 49.4
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 4.9e-43 178.7 113 75.2
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 5.0e-40 168.7 233 43.8
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 4.3e-39 165.6 169 52.1
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 1.8e-37 160.2 133 63.9
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 5.2e-37 158.7 237 40.5
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 1.1e-34 151.0 117 65.0
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 2.1e-33 146.7 93 77.4
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 2.1e-33 146.7 247 36.8
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 2.4e-26 123.2 74 78.4
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 3.2e-26 122.9 79 70.9
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 1.7e-24 117.1 89 67.4
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 3.4e-20 102.8 171 37.4
Actinidia02180 Actinidia chinensis HOM05D003706 ORTHO05D004487 5.8e-20 102.1 98 58.2
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 7.6e-20 101.7 244 32.0
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 2.9e-19 99.8 62 72.6
Sopen08g026640 Solanum pennellii HOM05D003706 ORTHO05D004487 6.4e-19 98.6 98 54.1
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 1.4e-18 97.4 195 36.4
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 3.3e-15 86.3 139 40.3
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 6.2e-14 82.0 87 52.9
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 8.1e-14 81.6 110 42.7
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 1.4e-13 80.9 59 67.8
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 3.1e-13 79.7 47 74.5
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 2.0e-12 77.0 81 53.1
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 5.8e-12 75.5 83 51.8
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 9.9e-12 74.7 72 50.0
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 4.6e-09 65.9 44 72.7
SEGI_34669 Sequoiadendron giganteum HOM05D003706 ORTHO05D004487 5.1e-08 62.4 72 51.4
Os04g0546400 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 1.6e-06 57.4 60 51.7
BolC7t45339H Brassica oleracea HOM05D003706 ORTHO05D004487 8.1e-06 55.1 81 40.7


User provided reference genes

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