Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10660 Selenicereus undatus HOM05D002160 ORTHO05D002012 3.0e-57 224.9 112 100.0
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 6.5e-12 74.3 59 61.0
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 1.2e-10 70.1 58 56.9
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.6e-10 68.6 59 55.9
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 4.7e-10 68.2 60 60.0
DCAR_014852 Daucus carota HOM05D002160 ORTHO05D002012 1.0e-09 67.0 59 54.2
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 1.0e-09 67.0 57 52.6
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 5.2e-09 64.7 58 56.9
CDE08G0642 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 5.2e-09 64.7 59 50.8
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 5.2e-09 64.7 60 55.0
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 6.8e-09 64.3 57 50.9
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 8.8e-09 63.9 60 50.0
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 8.8e-09 63.9 48 62.5
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 8.8e-09 63.9 59 54.2
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 1.2e-08 63.5 60 55.0
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 1.5e-08 63.2 59 50.8
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.5e-08 63.2 59 50.8
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.0e-08 62.8 58 51.7
AUR62019082 Chenopodium quinoa HOM05D002160 ORTHO05D002012 2.0e-08 62.8 56 53.6
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 2.0e-08 62.8 60 53.3
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 2.6e-08 62.4 61 50.8
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.4e-08 62.0 61 55.7
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.4e-08 62.0 59 54.2
Zm00001eb335880 Zea mays HOM05D002160 ORTHO05D002012 3.4e-08 62.0 56 46.4
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 4.4e-08 61.6 61 54.1
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 4.4e-08 61.6 61 54.1
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 4.4e-08 61.6 56 51.8
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.4e-08 61.6 59 54.2
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 4.4e-08 61.6 62 54.8
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 4.4e-08 61.6 60 51.7
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 5.7e-08 61.2 61 52.5
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 5.7e-08 61.2 61 52.5
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 5.7e-08 61.2 58 53.4
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 7.5e-08 60.8 56 55.4
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 7.5e-08 60.8 59 50.8
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 7.5e-08 60.8 62 51.6
Zm00001eb124800 Zea mays HOM05D002160 ORTHO05D002012 7.5e-08 60.8 98 40.8
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 9.8e-08 60.5 56 50.0
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 9.8e-08 60.5 57 49.1
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 9.8e-08 60.5 63 44.4
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 9.8e-08 60.5 59 52.5
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 9.8e-08 60.5 59 52.5
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 9.8e-08 60.5 59 52.5
Lsat_1_v5_gn_8_73001 Lactuca sativa HOM05D002160 ORTHO05D002012 9.8e-08 60.5 88 42.0
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.3e-07 60.1 59 50.8
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.3e-07 60.1 56 46.4
Zm00001eb124380 Zea mays HOM05D002160 ORTHO05D002012 1.3e-07 60.1 62 45.2
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 1.7e-07 59.7 59 50.8
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 2.2e-07 59.3 57 49.1
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.2e-07 59.3 56 46.4
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 2.8e-07 58.9 59 52.5
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 2.8e-07 58.9 61 52.5
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 3.7e-07 58.5 59 50.8
CDE02G2904 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 3.7e-07 58.5 59 50.8
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 3.7e-07 58.5 62 46.8
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 3.7e-07 58.5 60 50.0
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 4.8e-07 58.2 56 48.2
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 4.8e-07 58.2 59 47.5
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 4.8e-07 58.2 59 50.8
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 4.8e-07 58.2 60 48.3
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 6.3e-07 57.8 58 53.4
Lsat_1_v5_gn_9_23460 Lactuca sativa HOM05D002160 ORTHO05D002012 6.3e-07 57.8 56 51.8
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 6.3e-07 57.8 59 49.2
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 6.3e-07 57.8 60 48.3
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 8.3e-07 57.4 60 51.7
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 8.3e-07 57.4 59 47.5
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 1.1e-06 57.0 56 48.2
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.1e-06 57.0 60 51.7
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.1e-06 57.0 59 50.8
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 1.4e-06 56.6 58 48.3
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 1.4e-06 56.6 58 48.3
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 1.4e-06 56.6 56 44.6
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 1.4e-06 56.6 84 41.7
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 1.4e-06 56.6 60 48.3
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.4e-06 56.6 60 48.3
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.4e-06 56.6 62 51.6
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.4e-06 56.6 59 49.2
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.8e-06 56.2 60 48.3
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.8e-06 56.2 60 48.3
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.8e-06 56.2 59 47.5
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 1.8e-06 56.2 55 45.5
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 2.4e-06 55.8 60 48.3
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.4e-06 55.8 59 47.5
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 2.4e-06 55.8 59 49.2
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.1e-06 55.5 55 50.9
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 3.1e-06 55.5 60 46.7
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 3.1e-06 55.5 59 54.2
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 4.1e-06 55.1 60 46.7
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 4.1e-06 55.1 60 46.7
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 4.1e-06 55.1 60 46.7
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 4.1e-06 55.1 60 50.0
unitig_21.g21031 Utricularia gibba HOM05D002160 ORTHO05D002012 4.1e-06 55.1 59 50.8
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 5.4e-06 54.7 59 52.5
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 5.4e-06 54.7 59 52.5
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.4e-06 54.7 61 44.3
ECA236G3652 Erigeron canadensis HOM05D002160 ORTHO05D002012 5.4e-06 54.7 57 52.6
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 7.0e-06 54.3 61 44.3
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 7.0e-06 54.3 60 46.7
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 7.0e-06 54.3 60 46.7
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 7.0e-06 54.3 60 46.7
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 7.0e-06 54.3 60 46.7
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 7.0e-06 54.3 60 46.7
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 7.0e-06 54.3 56 42.9
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 7.0e-06 54.3 59 49.2
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 7.0e-06 54.3 56 42.9
CSS0026015 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 9.1e-06 53.9 69 40.6
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 9.1e-06 53.9 60 51.7
Solyc06g005465.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 9.1e-06 53.9 56 44.6


User provided reference genes

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