Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 1.9e-81 305.8 157 100.0
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 4.2e-41 171.8 151 59.6
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.1e-40 169.5 132 66.7
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 7.9e-40 167.5 159 56.0
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 7.9e-40 167.5 156 55.8
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 3.0e-39 165.6 156 59.6
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 3.0e-39 165.6 131 64.1
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 5.2e-39 164.9 145 61.4
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 5.2e-39 164.9 119 68.1
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 2.6e-38 162.5 157 58.0
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.6e-38 162.5 118 69.5
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 7.4e-38 161.0 118 66.1
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 7.4e-38 161.0 126 66.7
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 7.4e-38 161.0 152 55.9
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 9.7e-38 160.6 151 58.3
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.3e-37 160.2 143 62.2
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 2.8e-37 159.1 121 62.8
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.8e-37 159.1 155 54.8
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 3.7e-37 158.7 138 59.4
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 3.7e-37 158.7 138 59.4
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.8e-37 158.3 146 59.6
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 8.2e-37 157.5 152 58.6
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.1e-36 157.1 158 60.1
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.4e-36 156.8 151 56.3
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.4e-36 156.8 150 60.0
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.4e-36 156.8 145 57.9
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 1.4e-36 156.8 163 54.6
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.4e-36 156.0 131 58.8
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.4e-36 156.0 156 56.4
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 3.1e-36 155.6 175 54.3
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.1e-36 155.2 147 56.5
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 5.3e-36 154.8 150 56.7
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 5.3e-36 154.8 150 58.0
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 7.0e-36 154.5 152 56.6
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 9.1e-36 154.1 137 60.6
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.0e-34 150.6 165 51.5
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.3e-34 150.2 132 59.1
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.7e-34 149.8 155 52.3
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.2e-34 149.4 141 58.2
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 2.9e-34 149.1 150 55.3
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 5.0e-34 148.3 140 56.4
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.5e-33 146.7 127 59.1
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.9e-33 146.4 129 55.8
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 2.5e-33 146.0 124 58.9
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 4.2e-33 145.2 159 54.7
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 7.2e-33 144.4 146 54.8
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.2e-32 143.7 119 58.8
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.6e-32 143.3 141 55.3
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 2.7e-32 142.5 145 55.2
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 3.6e-32 142.1 147 55.1
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 3.6e-32 142.1 152 52.0
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 6.1e-32 141.4 127 59.1
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 8.0e-32 141.0 158 53.8
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 8.0e-32 141.0 157 52.2
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.0e-31 140.6 151 53.6
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.0e-31 140.6 152 49.3
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.8e-31 139.8 155 52.3
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.3e-31 139.4 158 53.2
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 2.3e-31 139.4 121 56.2
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.3e-31 139.4 127 56.7
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 3.0e-31 139.0 124 59.7
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.2e-31 138.3 139 55.4
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 6.7e-31 137.9 156 53.8
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.2e-30 137.1 151 51.0
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.2e-30 137.1 145 56.6
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.5e-30 136.7 136 55.1
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.0e-30 136.3 140 53.6
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 2.0e-30 136.3 156 53.8
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.0e-30 136.3 149 50.3
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 2.6e-30 136.0 129 58.1
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.3e-30 135.6 152 52.0
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 4.4e-30 135.2 154 50.0
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 5.7e-30 134.8 139 54.0
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 9.7e-30 134.0 132 54.5
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 9.7e-30 134.0 155 48.4
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 9.7e-30 134.0 155 52.3
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 9.7e-30 134.0 118 55.9
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.7e-29 133.3 156 48.7
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 3.7e-29 132.1 165 49.1
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 4.8e-29 131.7 158 50.0
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.1e-28 130.6 151 54.3
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 1.8e-28 129.8 157 48.4
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.8e-28 129.8 121 53.7
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.8e-28 129.8 169 46.7
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.4e-28 129.4 132 51.5
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 2.4e-28 129.4 132 51.5
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 3.1e-28 129.0 89 71.9
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 7.0e-28 127.9 149 48.3
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 9.1e-28 127.5 137 51.1
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 9.1e-28 127.5 152 49.3
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 2.0e-27 126.3 141 52.5
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 2.0e-27 126.3 152 48.7
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 2.7e-27 125.9 136 50.7
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 2.7e-27 125.9 136 50.7
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 2.7e-27 125.9 94 68.1
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 5.9e-27 124.8 140 49.3
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.0e-26 124.0 143 49.7
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.0e-26 124.0 140 48.6
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.3e-26 123.6 158 46.2
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.3e-26 123.6 159 47.2
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-26 123.2 139 48.9
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-26 123.2 139 48.9
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 2.2e-26 122.9 106 56.6
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.9e-26 122.5 135 50.4
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.9e-26 122.5 135 50.4
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 8.5e-26 120.9 141 47.5
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 8.5e-26 120.9 141 47.5
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 8.5e-26 120.9 142 49.3
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 8.5e-26 120.9 91 62.6
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.1e-25 120.6 91 65.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.5e-25 120.2 175 44.6
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 2.5e-25 119.4 151 45.7
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 9.4e-25 117.5 128 50.8
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.6e-24 115.5 89 61.8
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 4.7e-24 115.2 90 62.2
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 4.7e-24 115.2 91 59.3
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.0e-23 114.0 83 63.9
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.8e-23 113.2 155 41.3
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 3.0e-23 112.5 139 46.8
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 3.0e-23 112.5 145 41.4
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 5.2e-23 111.7 149 40.9
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 5.2e-23 111.7 155 41.3
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 6.8e-23 111.3 150 44.7
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 6.8e-23 111.3 150 44.7
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 6.8e-23 111.3 150 44.7
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 8.8e-23 110.9 149 40.9
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 8.8e-23 110.9 94 57.4
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.5e-22 110.2 75 70.7
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 4.4e-22 108.6 151 40.4
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.8e-20 103.2 122 43.4
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.4e-20 102.8 141 45.4
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 4.1e-20 102.1 155 41.9
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.5e-19 99.0 104 55.8
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 3.5e-19 99.0 149 43.0
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 7.7e-19 97.8 118 47.5
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.7e-18 96.7 122 45.9
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 2.9e-18 95.9 113 47.8
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 3.8e-18 95.5 113 51.3
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 6.5e-18 94.7 168 38.7
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.5e-17 92.8 131 42.0
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 3.3e-17 92.4 154 38.3
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 1.8e-15 86.7 122 40.2
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.3e-15 86.3 66 62.1
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 4.1e-12 75.5 99 45.5
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 5.4e-12 75.1 151 33.1
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 5.4e-12 75.1 84 46.4
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 5.4e-12 75.1 53 64.2
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 3.5e-11 72.4 142 37.3
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.0e-10 70.9 90 42.2
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 5.0e-10 68.6 97 41.2
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 6.6e-10 68.2 46 67.4
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 2.5e-09 66.2 71 47.9
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 3.3e-09 65.9 130 35.4
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 2.8e-08 62.8 103 40.8
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.2e-06 57.4 43 62.8
Hma1.2p1_0549F.1_g176960 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.4e-06 55.8 40 70.0


User provided reference genes

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