Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.1e-117 425.6 206 100.0
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 3.0e-95 352.1 206 81.1
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.5e-86 323.2 208 76.4
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.1e-84 317.0 207 74.4
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.4e-84 316.6 207 74.4
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 3.1e-84 315.5 204 76.5
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 4.9e-82 308.1 207 72.0
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 1.4e-81 306.6 207 72.5
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 9.3e-81 303.9 206 70.4
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 9.3e-81 303.9 206 71.4
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.7e-80 302.4 206 71.4
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 5.1e-79 298.1 207 70.0
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.1e-78 297.0 206 69.9
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.5e-78 295.8 206 68.9
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 4.3e-78 295.0 207 70.5
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 3.7e-77 292.0 192 75.5
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.7e-77 292.0 206 68.9
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 6.3e-77 291.2 208 68.3
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.1e-76 290.4 207 69.1
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 1.4e-76 290.0 206 68.9
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 3.1e-76 288.9 200 67.0
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 4.1e-76 288.5 206 67.5
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 6.9e-76 287.7 199 67.3
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 9.0e-76 287.3 207 68.1
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.2e-75 287.0 206 68.9
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.2e-75 287.0 184 73.4
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 2.0e-75 286.2 192 74.5
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.0e-75 286.2 206 68.0
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.0e-75 286.2 206 68.9
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 2.6e-75 285.8 206 67.0
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 2.6e-75 285.8 206 67.0
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 3.4e-75 285.4 184 73.4
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 4.5e-75 285.0 200 66.0
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 4.5e-75 285.0 200 66.0
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 7.6e-75 284.3 206 68.9
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 7.6e-75 284.3 205 68.3
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.0e-74 283.9 197 70.1
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.3e-74 283.5 206 67.0
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.7e-74 283.1 207 67.6
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 2.2e-74 282.7 207 66.7
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 2.2e-74 282.7 205 67.8
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 8.5e-74 280.8 194 68.6
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 8.5e-74 280.8 208 66.3
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 1.1e-73 280.4 206 66.5
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.9e-73 279.6 196 69.9
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 3.2e-73 278.9 204 66.2
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 4.2e-73 278.5 208 66.3
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 5.5e-73 278.1 205 68.3
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 9.3e-73 277.3 211 65.4
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 9.3e-73 277.3 199 66.3
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 9.3e-73 277.3 204 65.7
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 1.2e-72 276.9 203 67.0
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 1.2e-72 276.9 203 67.5
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 2.1e-72 276.2 192 69.8
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 3.6e-72 275.4 203 67.0
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 3.6e-72 275.4 204 64.2
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.3e-71 273.5 204 64.7
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.3e-71 273.5 204 64.7
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 1.8e-71 273.1 206 65.5
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 1.8e-71 273.1 204 63.7
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 2.3e-71 272.7 206 65.0
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 3.0e-71 272.3 197 65.5
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 3.0e-71 272.3 206 64.6
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 3.9e-71 271.9 205 65.4
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 3.9e-71 271.9 206 64.1
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 5.1e-71 271.6 205 63.4
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 5.1e-71 271.6 213 63.4
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 6.7e-71 271.2 197 65.0
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 8.7e-71 270.8 191 69.6
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 1.5e-70 270.0 207 65.7
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.5e-70 270.0 193 69.4
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 1.9e-70 269.6 205 65.4
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 1.9e-70 269.6 205 64.4
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.9e-70 269.6 204 62.3
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 3.3e-70 268.9 184 69.0
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 4.3e-70 268.5 204 63.7
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 7.4e-70 267.7 207 61.4
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 7.4e-70 267.7 191 64.9
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 9.7e-70 267.3 204 63.7
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.6e-69 266.5 204 62.7
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 4.8e-69 265.0 197 64.5
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 8.2e-69 264.2 205 62.0
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 8.2e-69 264.2 204 62.7
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 8.2e-69 264.2 206 64.6
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 1.4e-68 263.5 197 63.5
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 1.4e-68 263.5 197 63.5
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 1.4e-68 263.5 197 63.5
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 1.4e-68 263.5 201 61.7
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.4e-68 263.5 207 61.4
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 1.8e-68 263.1 197 63.5
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 1.8e-68 263.1 197 63.5
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.4e-68 262.7 207 62.3
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 3.1e-68 262.3 204 63.2
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 3.1e-68 262.3 210 62.9
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 6.9e-68 261.2 206 61.2
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 6.9e-68 261.2 207 60.9
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 9.1e-68 260.8 198 62.6
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 4.5e-67 258.5 197 62.4
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 5.9e-67 258.1 197 61.9
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 5.9e-67 258.1 236 55.5
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.3e-66 256.9 170 71.8
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 1.7e-66 256.5 202 61.9
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 1.7e-66 256.5 197 61.9
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 2.2e-66 256.1 192 62.5
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 3.8e-66 255.4 185 67.6
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.0e-66 255.0 206 63.1
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 6.5e-66 254.6 205 62.0
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 1.1e-65 253.8 193 64.8
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 1.4e-65 253.4 198 62.1
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 1.9e-65 253.1 203 63.1
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 3.6e-64 248.8 204 59.3
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 3.0e-63 245.7 222 58.6
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 8.8e-63 244.2 182 67.0
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 2.0e-62 243.0 180 66.7
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 6.9e-60 234.6 194 60.8
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 3.4e-59 232.3 206 58.7
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 3.4e-59 232.3 204 54.9
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 4.5e-59 231.9 194 59.8
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 7.2e-57 224.6 185 61.6
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.8e-55 219.9 144 70.1
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 8.8e-55 217.6 227 52.0
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 8.8e-55 217.6 227 52.0
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 1.7e-53 213.4 175 62.3
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 3.7e-53 212.2 145 69.7
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 8.2e-53 211.1 124 79.8
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 7.0e-52 208.0 144 68.8
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 9.4e-49 197.6 190 49.5
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 2.3e-47 193.0 147 63.9
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 2.6e-46 189.5 163 55.2
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 9.7e-46 187.6 142 66.9
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.7e-45 186.8 195 50.8
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 1.2e-43 180.6 142 59.2
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 3.8e-42 175.6 144 61.8
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 5.0e-42 175.3 124 66.9
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 1.9e-41 173.3 195 46.2
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 3.0e-39 166.0 143 57.3
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 3.7e-37 159.1 109 69.7
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 7.0e-36 154.8 180 42.8
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 2.0e-35 153.3 149 45.6
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 4.5e-35 152.1 199 44.7
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 4.5e-35 152.1 114 65.8
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 4.2e-33 145.6 207 43.0
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 8.9e-31 137.9 145 45.5
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 8.3e-29 131.3 180 40.6
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 3.2e-20 102.8 89 59.6
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 5.4e-20 102.1 153 34.6
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 2.7e-19 99.8 74 59.5
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 2.3e-18 96.7 75 60.0
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 3.9e-18 95.9 65 69.2
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 5.0e-18 95.5 69 63.8
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 5.6e-17 92.0 65 66.2
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 1.2e-14 84.3 49 73.5
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 3.4e-14 82.8 76 51.3
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 3.4e-14 82.8 49 77.6
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 4.1e-12 75.9 59 69.5
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 2.3e-10 70.1 54 55.6
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 7.3e-09 65.1 44 70.5
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 1.6e-08 63.9 61 52.5
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 8.1e-08 61.6 44 68.2
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.8e-07 60.5 42 61.9
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 3.1e-07 59.7 33 78.8
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 1.5e-06 57.4 90 33.3
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 2.0e-06 57.0 33 75.8
EL10Ac4g07530 Beta vulgaris HOM05D000285 ORTHO05D000241 3.4e-06 56.2 62 38.7
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 4.4e-06 55.8 74 35.1
FvH4_6g51431 Fragaria vesca HOM05D000285 ORTHO05D000241 5.8e-06 55.5 74 33.8
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.8e-06 55.5 74 33.8
RcHm_v2.0_Chr2g0173111 Rosa chinensis HOM05D000285 ORTHO05D000241 5.8e-06 55.5 74 33.8


User provided reference genes

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