Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 0.0e+00 1482.2 783 100.0
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 2.6e-285 985.3 787 66.7
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.1e-278 963.4 787 65.4
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.8e-276 954.9 800 64.5
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 4.1e-262 908.3 792 62.1
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.9e-238 829.7 836 56.6
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 3.9e-236 822.0 801 58.7
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 4.0e-233 812.0 825 56.0
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 5.1e-228 795.0 820 55.0
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 3.3e-227 792.3 822 55.2
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 8.1e-226 787.7 879 52.1
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.5e-224 783.5 817 57.2
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.9e-222 776.5 789 56.4
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 4.6e-221 771.9 791 55.4
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 2.1e-218 763.1 822 54.1
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.4e-217 760.4 825 53.3
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 6.9e-217 758.1 817 54.5
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.4e-216 755.7 784 57.0
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 4.9e-215 751.9 786 57.1
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 8.4e-215 751.1 707 58.7
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 1.9e-214 750.0 785 57.5
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 7.1e-214 748.0 787 57.8
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.1e-213 746.5 795 56.7
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 2.1e-213 746.5 788 55.5
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 7.9e-213 744.6 839 51.4
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.3e-212 743.8 785 56.9
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.0e-212 742.7 786 56.9
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 3.0e-212 742.7 806 54.5
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 2.5e-211 739.6 817 52.3
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.6e-210 736.9 827 52.7
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.6e-210 736.9 838 50.7
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 2.1e-210 736.5 825 52.0
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 6.2e-210 734.9 843 50.8
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 6.2e-210 734.9 813 52.8
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 6.2e-210 734.9 801 52.8
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.1e-209 732.6 774 54.0
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 6.9e-209 731.5 827 53.1
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.0e-208 729.9 804 52.1
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.8e-208 728.4 801 52.7
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 7.6e-208 728.0 819 53.1
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 4.9e-207 725.3 836 50.8
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.4e-206 723.8 819 51.4
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 3.5e-205 719.2 826 50.7
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.0e-204 717.6 819 50.1
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.8e-204 716.8 821 50.5
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.8e-204 716.8 821 50.3
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 3.0e-204 716.1 816 50.1
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 3.9e-204 715.7 824 50.5
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 8.7e-204 714.5 782 53.5
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 8.7e-204 714.5 821 50.5
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.9e-203 713.4 785 52.7
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.9e-203 713.4 785 52.0
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 3.3e-203 712.6 810 52.0
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 5.6e-203 711.8 818 50.2
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 9.6e-203 711.1 826 53.4
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 1.3e-202 710.7 702 56.6
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 2.1e-202 709.9 863 49.9
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 1.8e-201 706.8 794 50.5
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 9.0e-201 704.5 571 66.0
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 7.6e-200 701.4 816 50.2
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.3e-199 700.7 777 52.9
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 8.4e-199 698.0 821 51.0
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.4e-198 697.2 862 49.9
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 4.2e-198 695.7 778 52.3
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 4.2e-198 695.7 783 53.0
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 9.3e-198 694.5 808 51.1
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 1.6e-197 693.7 786 51.9
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.7e-197 693.0 804 50.4
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 2.7e-197 693.0 811 49.8
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 4.6e-197 692.2 816 49.8
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.0e-197 691.8 787 50.7
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 6.0e-197 691.8 820 48.8
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 9.6e-195 684.5 816 50.5
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 2.8e-194 682.9 794 50.4
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 2.8e-194 682.9 809 49.7
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 3.7e-194 682.6 668 57.8
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 9.0e-193 677.9 790 50.4
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 5.9e-192 675.2 694 55.9
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 7.6e-192 674.9 779 51.7
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.3e-191 674.1 809 49.2
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 5.0e-191 672.2 818 48.8
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 8.5e-191 671.4 810 49.1
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 7.9e-189 664.8 812 48.8
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.8e-188 663.7 727 53.0
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 2.3e-188 663.3 770 50.6
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.5e-187 660.6 862 47.6
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.9e-187 660.2 815 47.6
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 2.5e-187 659.8 817 48.8
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 4.3e-187 659.1 746 49.7
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 8.2e-186 654.8 721 51.6
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 4.1e-185 652.5 815 49.2
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 9.1e-185 651.4 805 48.6
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 9.1e-185 651.4 723 50.8
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 4.5e-184 649.0 726 50.4
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 2.2e-183 646.7 735 50.3
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 5.0e-183 645.6 820 48.7
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 4.6e-181 639.0 814 48.5
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 6.1e-181 638.6 826 47.5
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 3.0e-180 636.3 812 48.0
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 8.8e-180 634.8 816 47.9
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.1e-179 634.4 822 46.8
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 9.7e-179 631.3 816 47.7
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.2e-178 630.2 743 49.0
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 3.7e-178 629.4 806 47.9
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 1.4e-177 627.5 864 44.9
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 5.3e-177 625.5 795 47.8
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 2.0e-176 623.6 762 49.3
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.1e-174 617.8 674 53.7
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 2.3e-172 610.1 818 45.6
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.1e-171 607.8 731 48.8
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.5e-171 607.4 794 46.1
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 8.0e-165 585.1 814 46.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 6.7e-164 582.0 678 50.6
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 2.4e-161 573.5 758 45.0
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.2e-159 567.0 807 43.7
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 2.6e-155 553.5 804 43.7
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 3.7e-154 549.7 561 55.6
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 6.3e-154 548.9 809 43.1
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 5.0e-151 539.3 767 44.1
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 1.9e-142 510.8 803 41.7
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 8.9e-140 501.9 754 41.5
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 3.7e-138 496.5 504 56.9
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.6e-133 481.1 763 40.1
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.8e-132 477.6 500 53.2
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 4.4e-131 473.0 882 37.6
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.6e-128 464.5 496 53.0
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 6.0e-128 462.6 775 41.2
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 3.4e-123 446.8 710 41.3
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 7.5e-123 445.7 760 40.1
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 7.1e-121 439.1 566 47.9
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.5e-118 430.6 390 60.5
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 3.1e-116 423.7 820 37.1
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.1e-110 405.2 772 35.8
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 9.0e-92 342.4 415 47.2
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.5e-86 324.3 748 32.6
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 4.3e-86 323.6 605 36.0
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 3.1e-84 317.4 722 32.7
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 4.2e-73 280.4 370 46.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.4e-67 260.8 230 60.9
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 7.7e-67 259.6 259 56.8
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 2.4e-60 238.0 319 44.8
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.3e-39 168.3 261 42.1
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 7.5e-38 163.3 140 63.6
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-34 152.5 383 31.9
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.7e-34 152.1 231 43.3
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 6.6e-34 150.2 377 32.9
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 6.6e-34 150.2 377 32.9
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 4.1e-28 131.0 201 42.3
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 4.1e-28 131.0 201 42.3
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-19 102.8 102 52.0
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 2.0e-19 102.1 184 37.5
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 2.3e-18 98.6 344 27.3
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 3.0e-18 98.2 219 35.6
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.2e-16 92.8 137 48.2
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 1.2e-16 92.8 137 38.7
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 7.5e-14 83.6 165 34.5
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 2.1e-11 75.5 174 34.5
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-10 72.8 205 26.8
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 3.0e-10 71.6 127 36.2
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 3.3e-09 68.2 116 39.7
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 1.4e-07 62.8 86 45.3
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 4.0e-07 61.2 50 54.0
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 9.9e-06 56.6 102 36.3


User provided reference genes

Program Settings