Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 2.6e-106 388.7 187 100.0
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 5.0e-81 304.7 187 79.1
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.1e-80 303.5 187 79.1
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 2.3e-78 295.8 180 76.1
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 2.9e-73 278.9 184 69.6
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 3.8e-73 278.5 176 72.7
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 5.0e-73 278.1 176 71.0
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.4e-72 276.6 178 69.7
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.9e-72 276.2 176 70.5
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.9e-72 276.2 176 71.0
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 2.5e-72 275.8 179 70.4
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 3.2e-72 275.4 176 71.0
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 4.2e-72 275.0 182 68.7
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 5.5e-72 274.6 181 69.1
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 7.2e-72 274.2 177 67.8
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 1.2e-71 273.5 176 70.5
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 6.1e-71 271.2 176 69.3
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 1.0e-70 270.4 176 68.8
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 3.0e-70 268.9 178 67.4
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 3.0e-70 268.9 176 69.9
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 3.0e-70 268.9 178 69.1
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 8.8e-70 267.3 183 64.5
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 8.8e-70 267.3 183 64.5
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 8.8e-70 267.3 177 65.5
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.1e-69 266.9 178 66.9
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.1e-69 266.9 176 68.2
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.1e-69 266.9 180 66.1
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.5e-69 266.5 176 67.6
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 2.0e-69 266.2 179 67.0
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 2.0e-69 266.2 176 69.3
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 2.6e-69 265.8 178 66.9
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 3.3e-69 265.4 181 67.4
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 3.3e-69 265.4 175 66.3
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 3.3e-69 265.4 188 64.9
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 4.4e-69 265.0 176 67.6
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 5.7e-69 264.6 177 63.3
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 5.7e-69 264.6 176 68.2
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 7.4e-69 264.2 176 68.8
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 9.7e-69 263.8 177 68.4
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.7e-68 263.1 181 68.0
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 2.2e-68 262.7 181 65.7
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 2.8e-68 262.3 180 66.1
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 3.7e-68 261.9 176 66.5
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 4.8e-68 261.5 180 65.0
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 8.2e-68 260.8 177 65.0
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 1.4e-67 260.0 177 65.0
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.8e-67 259.6 174 67.2
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.8e-67 259.6 176 65.9
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 1.8e-67 259.6 172 68.0
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 2.4e-67 259.2 178 64.6
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 3.1e-67 258.8 182 64.8
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 3.1e-67 258.8 184 64.1
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 4.1e-67 258.5 180 66.7
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 4.1e-67 258.5 178 66.9
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 5.3e-67 258.1 180 66.1
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 1.2e-66 256.9 173 65.9
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.2e-66 256.9 174 69.0
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 2.6e-66 255.8 178 63.5
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 4.5e-66 255.0 176 64.8
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 5.9e-66 254.6 174 67.2
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 5.9e-66 254.6 178 65.7
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 7.7e-66 254.2 177 65.0
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.0e-65 253.8 177 62.7
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.3e-65 253.4 175 66.9
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 1.7e-65 253.1 175 65.1
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.9e-65 252.3 171 67.8
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 2.9e-65 252.3 171 67.3
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 2.9e-65 252.3 172 64.5
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.5e-64 250.0 176 64.2
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 4.2e-64 248.4 172 63.4
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 7.2e-64 247.7 175 62.9
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 2.1e-63 246.1 176 64.8
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 2.7e-63 245.7 181 64.1
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 6.1e-63 244.6 179 63.7
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 1.4e-62 243.4 177 66.1
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.4e-62 243.4 176 59.7
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 1.8e-62 243.0 174 63.2
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 2.3e-62 242.7 154 69.5
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 4.0e-62 241.9 174 63.8
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 5.2e-62 241.5 177 62.1
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 1.1e-61 240.4 176 63.1
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.5e-61 240.0 167 64.1
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 4.4e-61 238.4 182 60.4
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 5.7e-61 238.0 174 62.1
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 5.7e-61 238.0 155 69.0
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.3e-60 236.9 162 64.2
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.4e-59 233.4 161 65.2
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.4e-59 233.4 144 70.8
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 2.4e-59 232.6 173 62.4
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 4.1e-59 231.9 172 62.8
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 4.1e-59 231.9 173 59.0
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 4.1e-59 231.9 173 59.0
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 5.3e-59 231.5 175 60.0
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 7.0e-59 231.1 162 64.8
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 7.0e-59 231.1 162 64.8
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 9.1e-59 230.7 176 61.9
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 3.5e-58 228.8 170 61.2
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.9e-57 225.7 154 65.6
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 1.9e-56 223.0 161 63.4
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.9e-56 223.0 152 68.4
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.9e-56 223.0 149 68.5
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.0e-54 217.2 173 60.7
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 4.4e-53 211.8 153 62.7
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.0e-49 200.7 180 49.4
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 1.5e-48 196.8 178 55.6
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 3.2e-48 195.7 175 50.9
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 3.1e-43 179.1 175 49.7
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 5.4e-43 178.3 128 60.2
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.3e-41 173.7 186 45.2
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.4e-38 163.7 115 65.2
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 2.3e-38 162.9 124 60.5
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 1.2e-34 150.6 181 45.3
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 5.6e-32 141.7 138 55.8
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 3.4e-21 105.9 160 37.5
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 6.4e-20 101.7 67 71.6
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 3.5e-18 95.9 165 39.4
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 3.9e-17 92.4 153 38.6
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 9.5e-16 87.8 59 64.4
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 8.9e-14 81.3 91 47.3
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 6.8e-06 55.1 179 26.3


User provided reference genes

Program Settings