Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 2.7e-106 388.7 190 100.0
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 4.5e-98 361.3 190 91.1
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 5.9e-98 360.9 190 92.1
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 1.0e-97 360.1 190 90.0
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 4.9e-92 341.3 189 84.7
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 6.3e-92 340.9 190 85.8
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 1.4e-91 339.7 191 86.4
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 1.4e-91 339.7 191 86.4
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 3.2e-91 338.6 191 85.9
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 4.1e-91 338.2 191 85.9
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 4.1e-91 338.2 191 85.9
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 4.1e-91 338.2 191 83.8
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 5.4e-91 337.8 191 85.9
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 5.4e-91 337.8 190 84.2
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 5.4e-91 337.8 190 85.3
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 7.0e-91 337.4 190 84.2
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 9.2e-91 337.0 191 83.8
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 9.2e-91 337.0 192 85.9
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 9.2e-91 337.0 191 85.3
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 1.2e-90 336.7 191 85.3
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 1.2e-90 336.7 191 85.3
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 1.2e-90 336.7 191 84.3
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 2.0e-90 335.9 191 84.3
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 2.0e-90 335.9 190 83.7
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 2.7e-90 335.5 190 83.2
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 4.6e-90 334.7 191 84.3
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 4.6e-90 334.7 187 83.4
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 5.9e-90 334.3 187 82.9
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 5.9e-90 334.3 189 83.1
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 5.9e-90 334.3 192 84.9
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 7.8e-90 334.0 191 83.8
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 7.8e-90 334.0 190 83.7
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 7.8e-90 334.0 189 83.6
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 1.0e-89 333.6 191 83.8
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 1.0e-89 333.6 191 84.8
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 1.0e-89 333.6 190 83.7
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 1.0e-89 333.6 192 83.9
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.3e-89 333.2 190 83.7
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 1.7e-89 332.8 190 83.2
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 2.3e-89 332.4 191 84.8
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 2.9e-89 332.0 191 82.7
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 2.9e-89 332.0 191 82.7
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 2.9e-89 332.0 191 83.2
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 2.9e-89 332.0 193 81.9
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 2.9e-89 332.0 190 82.6
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 2.9e-89 332.0 191 83.8
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 2.9e-89 332.0 188 83.0
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 3.9e-89 331.6 190 83.7
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 3.9e-89 331.6 191 83.8
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 5.0e-89 331.3 190 82.6
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 5.0e-89 331.3 190 83.7
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 6.6e-89 330.9 191 83.2
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 8.6e-89 330.5 190 82.6
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 8.6e-89 330.5 190 82.6
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 8.6e-89 330.5 190 83.2
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 8.6e-89 330.5 192 81.8
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 1.1e-88 330.1 190 83.2
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 1.1e-88 330.1 191 82.2
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 1.1e-88 330.1 190 81.6
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 1.1e-88 330.1 191 84.3
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 1.5e-88 329.7 191 83.2
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 1.5e-88 329.7 190 83.7
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 1.5e-88 329.7 190 83.7
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 1.9e-88 329.3 190 84.2
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 1.9e-88 329.3 192 83.9
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.9e-88 329.3 190 82.6
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.3e-88 328.6 190 82.1
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 3.3e-88 328.6 192 83.3
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 3.3e-88 328.6 190 81.6
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 5.6e-88 327.8 191 84.8
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 5.6e-88 327.8 190 82.1
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 7.3e-88 327.4 192 82.3
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 9.5e-88 327.0 189 82.5
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 9.5e-88 327.0 190 81.6
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 9.5e-88 327.0 190 82.6
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.2e-87 326.6 191 80.6
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 3.6e-87 325.1 191 81.2
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 3.6e-87 325.1 191 83.8
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 4.7e-87 324.7 191 79.6
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 4.7e-87 324.7 193 79.8
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 4.7e-87 324.7 193 79.3
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 6.1e-87 324.3 190 81.1
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 6.1e-87 324.3 190 80.5
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 8.0e-87 323.9 191 81.2
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 8.0e-87 323.9 191 81.7
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 1.8e-86 322.8 191 80.6
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 3.1e-86 322.0 191 82.7
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 3.1e-86 322.0 191 79.6
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 5.2e-86 321.2 190 80.0
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 8.9e-86 320.5 190 81.1
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 1.5e-85 319.7 191 80.1
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 2.6e-85 318.9 190 78.9
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 5.8e-85 317.8 186 83.9
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 5.8e-85 317.8 191 79.6
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 7.5e-85 317.4 190 78.9
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.3e-84 316.6 190 77.4
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 1.7e-84 316.2 188 79.3
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 2.2e-84 315.8 190 77.9
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 4.9e-84 314.7 191 78.5
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 8.3e-84 313.9 194 77.8
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 2.4e-83 312.4 178 83.7
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 9.2e-83 310.5 190 75.8
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 4.6e-82 308.1 190 75.3
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 2.3e-81 305.8 190 78.9
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 5.0e-81 304.7 190 74.7
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.9e-80 302.8 190 76.3
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 4.7e-79 298.1 156 90.4
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 3.9e-73 278.5 191 69.6
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 2.5e-72 275.8 158 84.8
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 6.2e-71 271.2 191 68.1
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.4e-70 270.0 188 65.4
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.8e-70 269.6 190 67.9
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.4e-67 260.0 191 67.5
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 7.1e-67 257.7 157 77.7
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 1.1e-64 250.4 147 83.0
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 4.6e-58 228.4 149 75.2
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.0e-57 227.3 184 56.0
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.8e-55 219.2 184 54.3
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 1.1e-54 217.2 186 59.7
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 5.3e-54 214.9 192 52.6
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 5.4e-51 204.9 187 53.5
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 5.4e-51 204.9 149 67.1
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 9.3e-51 204.1 182 56.6
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 9.9e-45 184.1 183 54.6
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 1.4e-38 163.7 189 48.7
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 2.4e-38 162.9 188 47.3
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 1.2e-37 160.6 95 83.2
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 2.5e-32 142.9 91 72.5
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 5.1e-25 118.6 185 36.2
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 8.7e-25 117.9 79 68.4
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 2.2e-23 113.2 184 33.7
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 7.7e-21 104.8 50 92.0
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.2e-12 76.6 157 33.1
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 3.9e-09 65.9 31 90.3
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 1.3e-07 60.8 28 92.9


User provided reference genes

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