Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 5.3e-90 334.3 171 100.0
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 2.4e-45 186.0 104 84.6
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 5.2e-45 184.9 101 87.1
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 3.4e-44 182.2 99 85.9
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 5.8e-44 181.4 99 84.8
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.3e-43 180.3 99 83.8
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 1.7e-43 179.9 101 83.2
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 1.7e-43 179.9 101 83.2
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 3.8e-43 178.7 99 82.8
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 3.8e-43 178.7 101 83.2
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 6.4e-43 177.9 99 81.8
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 8.4e-43 177.6 99 82.8
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 1.1e-42 177.2 99 82.8
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 1.4e-42 176.8 176 53.4
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.4e-42 176.8 99 83.8
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.4e-42 176.8 100 80.0
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.4e-42 176.8 99 81.8
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 1.4e-42 176.8 99 82.8
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.4e-42 176.8 99 82.8
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.4e-42 176.8 99 81.8
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.9e-42 176.4 99 82.8
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 1.9e-42 176.4 99 80.8
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 1.9e-42 176.4 102 80.4
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 2.4e-42 176.0 99 82.8
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 2.4e-42 176.0 99 80.8
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 2.4e-42 176.0 99 80.8
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 3.2e-42 175.6 99 82.8
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 3.2e-42 175.6 103 79.6
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.2e-42 175.6 99 81.8
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 3.2e-42 175.6 102 79.4
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 5.4e-42 174.9 99 80.8
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 7.1e-42 174.5 102 79.4
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 7.1e-42 174.5 100 80.0
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 9.3e-42 174.1 99 80.8
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 9.3e-42 174.1 99 80.8
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 9.3e-42 174.1 99 83.8
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 9.3e-42 174.1 105 79.0
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 1.6e-41 173.3 99 79.8
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 2.1e-41 172.9 99 79.8
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 2.7e-41 172.6 99 80.8
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 3.5e-41 172.2 179 52.0
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 3.5e-41 172.2 100 80.0
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 4.6e-41 171.8 100 80.0
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 4.6e-41 171.8 99 80.8
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 6.0e-41 171.4 105 79.0
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 7.8e-41 171.0 99 82.8
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 7.8e-41 171.0 99 80.8
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 1.0e-40 170.6 99 80.8
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 1.0e-40 170.6 102 75.5
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 1.3e-40 170.2 98 81.6
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 1.3e-40 170.2 102 74.5
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 2.3e-40 169.5 105 77.1
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 2.3e-40 169.5 100 76.0
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 3.0e-40 169.1 105 77.1
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 3.9e-40 168.7 104 76.9
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 3.9e-40 168.7 118 68.6
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 5.1e-40 168.3 100 78.0
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 5.1e-40 168.3 105 74.3
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 6.6e-40 167.9 104 76.0
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 6.6e-40 167.9 99 79.8
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 6.6e-40 167.9 102 75.5
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 6.6e-40 167.9 105 75.2
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 6.6e-40 167.9 103 79.6
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 6.6e-40 167.9 108 72.2
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 8.7e-40 167.5 173 53.2
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 8.7e-40 167.5 111 72.1
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 8.7e-40 167.5 105 75.2
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 1.1e-39 167.2 106 73.6
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 1.1e-39 167.2 100 79.0
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.5e-39 166.8 99 79.8
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.5e-39 166.8 99 79.8
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.5e-39 166.8 99 79.8
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.5e-39 166.8 99 78.8
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 1.5e-39 166.8 94 83.0
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.9e-39 166.4 105 72.4
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 2.5e-39 166.0 100 79.0
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 2.5e-39 166.0 108 74.1
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 4.3e-39 165.2 99 74.7
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 4.3e-39 165.2 106 72.6
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 4.3e-39 165.2 99 76.8
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 5.6e-39 164.9 140 59.3
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 5.6e-39 164.9 101 76.2
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 7.3e-39 164.5 105 73.3
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 1.3e-38 163.7 100 77.0
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 1.6e-38 163.3 105 72.4
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 1.6e-38 163.3 116 70.7
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 2.1e-38 162.9 106 71.7
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 6.2e-38 161.4 105 72.4
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 6.2e-38 161.4 102 71.6
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 1.1e-37 160.6 100 72.0
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.4e-37 160.2 92 80.4
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 3.1e-37 159.1 130 64.6
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 4.0e-37 158.7 99 70.7
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 5.3e-37 158.3 93 79.6
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 5.8e-36 154.8 99 72.7
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 1.7e-35 153.3 92 75.0
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 1.1e-34 150.6 100 68.0
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 6.0e-33 144.8 99 68.7
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 1.5e-31 140.2 95 66.3
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 2.5e-31 139.4 100 58.0
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 2.5e-31 139.4 100 63.0
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 3.3e-31 139.0 98 62.2
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 5.6e-31 138.3 99 62.6
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 2.8e-30 136.0 72 88.9
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 6.2e-30 134.8 72 88.9
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.1e-29 134.0 73 87.7
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 2.4e-29 132.9 85 74.1
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 9.0e-29 131.0 73 82.2
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.2e-28 130.6 102 52.0
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 3.4e-28 129.0 72 83.3
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 7.6e-28 127.9 72 80.6
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 7.6e-28 127.9 129 55.0
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 4.9e-27 125.2 69 81.2
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 2.1e-25 119.8 80 66.2
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 2.1e-25 119.8 101 50.5
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 4.6e-25 118.6 73 72.6
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.9e-23 113.2 78 62.8
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 4.8e-22 108.6 69 69.6
Hund02977 Selenicereus undatus HOM05D000653 ORTHO05D002177 5.3e-21 105.1 57 100.0
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 1.7e-19 100.1 108 50.9
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 1.1e-18 97.4 64 71.9
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 3.2e-18 95.9 64 73.4
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 5.8e-12 75.1 54 63.0
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 6.5e-11 71.6 110 40.0
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 1.5e-07 60.5 42 64.3
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.5e-07 60.5 40 67.5
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 2.2e-06 56.6 32 81.2


User provided reference genes

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