Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.1e-111 406.8 215 100.0
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 6.5e-69 264.6 216 66.7
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 2.7e-67 259.2 215 67.0
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.2e-65 253.8 212 63.7
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.3e-64 250.4 195 64.6
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.8e-64 249.2 176 69.9
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.9e-64 248.4 176 70.5
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 8.3e-64 247.7 176 70.5
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 8.3e-64 247.7 175 69.7
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.1e-63 247.3 212 63.2
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.4e-63 246.9 171 70.2
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.4e-63 246.9 215 60.5
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 4.1e-63 245.4 203 62.6
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 5.4e-63 245.0 210 62.9
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 7.0e-63 244.6 210 62.4
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 9.2e-63 244.2 183 66.7
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.0e-62 243.0 169 71.6
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.7e-62 242.7 208 61.5
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 5.9e-62 241.5 195 63.6
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.3e-61 240.4 215 59.5
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.7e-61 240.0 215 60.5
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.8e-61 238.8 202 62.4
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 3.8e-61 238.8 205 60.5
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 5.0e-61 238.4 171 69.0
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 6.6e-61 238.0 171 66.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 6.6e-61 238.0 215 60.9
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.5e-60 236.9 205 60.5
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.5e-60 236.1 211 60.2
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 3.3e-60 235.7 192 60.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.3e-60 235.7 210 61.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 3.3e-60 235.7 203 61.1
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 4.3e-60 235.3 203 62.1
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 5.6e-60 235.0 181 61.9
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 9.5e-60 234.2 188 62.8
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.2e-59 233.8 178 62.9
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.2e-59 233.8 208 60.6
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.6e-59 233.4 215 59.1
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.6e-59 233.4 174 64.9
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.1e-59 233.0 207 59.4
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.1e-59 233.0 191 62.8
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.8e-59 232.6 171 64.9
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 2.8e-59 232.6 176 65.3
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.8e-59 232.6 197 58.4
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 2.8e-59 232.6 209 58.9
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 3.6e-59 232.3 171 64.3
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.6e-59 232.3 171 66.1
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 6.1e-59 231.5 215 57.7
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 6.1e-59 231.5 176 65.9
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 6.1e-59 231.5 206 57.8
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 6.1e-59 231.5 210 58.1
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 8.0e-59 231.1 212 57.5
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.0e-58 230.7 171 64.3
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.0e-58 230.7 175 67.4
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.0e-58 230.7 188 62.2
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.0e-58 230.7 210 57.6
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.0e-58 230.7 213 60.1
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.8e-58 229.9 171 66.1
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.3e-58 229.6 210 57.1
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 3.0e-58 229.2 176 65.9
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.0e-58 228.8 210 56.7
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 4.0e-58 228.8 185 61.1
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 4.0e-58 228.8 199 59.3
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 8.9e-58 227.6 176 64.2
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 8.9e-58 227.6 215 55.3
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 8.9e-58 227.6 179 65.9
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.2e-57 227.3 210 56.2
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 2.0e-57 226.5 196 59.7
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.6e-57 226.1 178 64.0
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 4.4e-57 225.3 210 60.0
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 7.5e-57 224.6 211 59.2
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 7.5e-57 224.6 171 65.5
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 7.5e-57 224.6 171 65.5
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 9.8e-57 224.2 171 65.5
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 9.8e-57 224.2 171 65.5
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 9.8e-57 224.2 170 65.3
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.7e-56 223.4 221 55.2
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.7e-56 223.4 221 55.2
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 6.4e-56 221.5 210 57.1
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.1e-55 220.7 179 59.2
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.1e-55 220.7 153 69.9
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.4e-55 220.3 210 57.6
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.4e-55 220.3 199 59.8
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.4e-55 219.5 162 66.7
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 2.4e-55 219.5 210 55.7
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 2.4e-55 219.5 203 57.1
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 4.1e-55 218.8 178 62.9
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 5.4e-55 218.4 209 57.4
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 7.0e-55 218.0 171 62.0
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.2e-54 217.2 155 67.1
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-54 217.2 199 54.8
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.2e-54 217.2 202 57.4
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.6e-54 216.9 174 62.1
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.0e-54 216.5 201 55.7
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.7e-54 216.1 210 55.7
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 5.9e-54 214.9 240 52.9
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.0e-53 214.2 168 62.5
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.7e-53 213.4 215 55.8
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 5.0e-53 211.8 211 55.9
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 6.6e-53 211.5 222 50.9
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 6.6e-53 211.5 196 56.6
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 8.6e-53 211.1 194 59.3
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.1e-52 210.7 211 55.9
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.5e-52 210.3 196 57.1
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 3.3e-52 209.1 196 56.6
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.3e-52 208.8 167 61.7
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 4.3e-52 208.8 167 61.7
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.6e-51 206.8 238 53.4
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.6e-51 206.8 211 55.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.8e-51 206.1 169 61.5
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.8e-51 206.1 169 61.5
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 6.2e-51 204.9 171 59.1
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.0e-50 204.1 213 52.6
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 4.0e-50 202.2 167 59.9
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.5e-49 200.3 208 51.4
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.6e-49 199.5 145 66.9
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 7.5e-49 198.0 196 54.6
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 9.8e-49 197.6 205 54.6
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.7e-48 196.8 210 50.5
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.9e-48 196.1 188 54.8
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 9.2e-47 191.0 167 59.3
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.0e-46 189.9 212 51.4
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 2.3e-45 186.4 195 52.8
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.0e-45 186.0 174 57.5
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.8e-42 176.8 153 57.5
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.4e-41 172.6 167 54.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.3e-40 167.9 166 50.6
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.4e-39 167.2 207 45.4
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 7.8e-38 161.4 139 59.0
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 5.1e-37 158.7 224 42.4
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.8e-35 152.9 168 48.2
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.1e-34 149.4 171 45.6
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.0e-33 146.7 167 48.5
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.4e-31 139.8 98 68.4
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.2e-31 139.4 125 57.6
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 5.1e-29 132.1 116 60.3
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 1.9e-28 130.2 102 58.8
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 2.5e-28 129.8 143 51.0
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.6e-27 127.1 98 64.3
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 5.2e-26 122.1 129 55.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-25 120.9 130 50.0
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 2.0e-25 120.2 92 62.0
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.7e-24 117.1 114 51.8
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.9e-23 113.6 85 65.9
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 3.9e-21 105.9 117 54.7
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 5.6e-20 102.1 95 56.8
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.8e-18 97.1 68 67.6
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 9.0e-18 94.7 77 59.7
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.9e-16 89.7 138 37.7
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 4.2e-15 85.9 136 36.0
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 3.0e-13 79.7 60 65.0
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.3e-10 68.9 90 45.6
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 1.5e-09 67.4 70 54.3
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.2e-08 63.5 49 63.3
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 6.4e-08 62.0 44 63.6
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 2.7e-06 56.6 36 72.2


User provided reference genes

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