Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.0e-146 523.5 281 100.0
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 2.8e-59 233.0 207 64.7
Hma1.2p1_0484F.1_g162800 Hydrangea macrophylla HOM05D004954 ORTHO05D008776 5.8e-33 145.6 110 70.9
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 5.4e-31 139.0 143 58.0
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 5.8e-25 119.0 146 50.0
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 3.9e-21 106.3 146 47.3
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 9.6e-20 101.7 132 48.5
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 6.2e-19 99.0 142 46.5
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 1.5e-17 94.4 146 43.2
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 4.5e-17 92.8 146 43.2
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 7.6e-17 92.0 139 43.9
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 1.3e-16 91.3 140 42.9
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 8.4e-16 88.6 166 38.0
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 2.4e-15 87.0 147 42.2
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 2.4e-15 87.0 147 42.2
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.2e-15 86.7 129 45.0
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 3.2e-15 86.7 129 45.0
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 4.2e-15 86.3 146 40.4
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 5.4e-15 85.9 151 41.1
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 7.1e-15 85.5 119 46.2
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 7.1e-15 85.5 140 41.4
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 7.1e-15 85.5 150 40.0
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 1.2e-14 84.7 155 40.0
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 1.6e-14 84.3 138 42.0
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 1.6e-14 84.3 118 45.8
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 2.1e-14 84.0 151 41.1
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 1.0e-13 81.6 140 39.3
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 1.8e-13 80.9 121 43.8
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 1.8e-13 80.9 141 40.4
vmacro13790 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.8e-13 80.9 49 77.6
vmacro23446 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.8e-13 80.9 49 77.6
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 2.3e-13 80.5 146 40.4
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 3.0e-13 80.1 119 45.4
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 3.9e-13 79.7 140 40.7
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 3.9e-13 79.7 140 40.7
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 3.9e-13 79.7 238 31.1
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 6.7e-13 79.0 198 33.8
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 1.1e-12 78.2 146 41.8
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 1.5e-12 77.8 129 43.4
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 1.5e-12 77.8 135 41.5
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 1.9e-12 77.4 140 42.9
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 2.5e-12 77.0 145 41.4
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 3.3e-12 76.6 140 41.4
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 3.3e-12 76.6 146 38.4
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 3.3e-12 76.6 119 43.7
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 5.6e-12 75.9 153 37.9
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 5.6e-12 75.9 137 40.9
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 7.4e-12 75.5 119 43.7
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 7.4e-12 75.5 146 38.4
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 9.6e-12 75.1 165 35.8
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 9.6e-12 75.1 135 40.0
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 1.3e-11 74.7 153 37.3
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 1.3e-11 74.7 140 40.0
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 1.3e-11 74.7 115 43.5
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.6e-11 74.3 137 39.4
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 1.6e-11 74.3 136 39.7
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 1.6e-11 74.3 144 39.6
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 2.1e-11 73.9 153 37.3
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 2.8e-11 73.6 138 39.1
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 3.7e-11 73.2 116 44.0
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 4.8e-11 72.8 117 43.6
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 6.2e-11 72.4 136 41.2
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.4e-10 71.2 146 34.9
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 1.4e-10 71.2 151 39.7
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 1.8e-10 70.9 114 41.2
Os11g0129800 Oryza sativa ssp. japonica HOM05D007286 ORTHO05D008955 3.1e-10 70.1 146 32.9
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 4.0e-10 69.7 133 37.6
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 9.0e-10 68.6 157 36.3
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 9.0e-10 68.6 135 40.7
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 9.0e-10 68.6 126 42.1
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 9.0e-10 68.6 130 39.2
Zm00001eb093550 Zea mays HOM05D007286 ORTHO05D008955 2.0e-09 67.4 130 36.2
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 2.6e-09 67.0 145 35.2
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 2.6e-09 67.0 146 35.6
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 3.8e-08 63.2 136 35.3
Glyma.15G221551 Glycine max HOM05D007286 ORTHO05D008955 4.9e-08 62.8 53 62.3
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 6.4e-08 62.4 112 42.0
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.1e-07 61.6 34 85.3
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 1.1e-07 61.6 34 88.2
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.1e-07 61.6 34 85.3
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 1.1e-07 61.6 34 85.3
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.1e-07 61.6 34 85.3
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.4e-07 61.2 34 85.3
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 1.9e-07 60.8 134 38.1
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.9e-07 60.8 34 85.3
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 1.9e-07 60.8 139 34.5
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 2.4e-07 60.5 34 82.4
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 2.4e-07 60.5 34 85.3
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 2.4e-07 60.5 34 79.4
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 3.2e-07 60.1 36 77.8
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 3.2e-07 60.1 34 79.4
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 3.2e-07 60.1 34 79.4
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 3.2e-07 60.1 34 82.4
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 4.2e-07 59.7 34 82.4
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 4.2e-07 59.7 34 82.4
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 5.5e-07 59.3 34 79.4
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 5.5e-07 59.3 34 82.4
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 5.5e-07 59.3 34 76.5
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 7.1e-07 58.9 64 56.2
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 7.1e-07 58.9 34 79.4
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 9.3e-07 58.5 34 76.5
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 9.3e-07 58.5 34 79.4
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 9.3e-07 58.5 34 76.5
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 9.3e-07 58.5 34 79.4
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 9.3e-07 58.5 34 76.5
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 9.3e-07 58.5 34 79.4
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 9.3e-07 58.5 34 76.5
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 9.3e-07 58.5 34 76.5
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 1.2e-06 58.2 134 37.3
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.2e-06 58.2 62 51.6
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.2e-06 58.2 34 79.4
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 1.2e-06 58.2 34 79.4
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.2e-06 58.2 34 79.4
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 1.2e-06 58.2 34 79.4
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.2e-06 58.2 36 75.0
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.6e-06 57.8 34 76.5
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 1.6e-06 57.8 34 76.5
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.6e-06 57.8 33 78.8
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 1.6e-06 57.8 34 79.4
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.6e-06 57.8 34 76.5
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.6e-06 57.8 52 61.5
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 2.1e-06 57.4 34 76.5
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 2.1e-06 57.4 34 79.4
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.1e-06 57.4 33 78.8
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 2.1e-06 57.4 34 76.5
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 2.1e-06 57.4 116 37.1
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 2.7e-06 57.0 34 76.5
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 2.7e-06 57.0 34 73.5
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 2.7e-06 57.0 34 73.5
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.7e-06 57.0 63 50.8
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.7e-06 57.0 34 79.4
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 2.7e-06 57.0 34 73.5
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.5e-06 56.6 34 79.4
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 3.5e-06 56.6 34 76.5
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 3.5e-06 56.6 34 76.5
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 3.5e-06 56.6 34 76.5
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 4.6e-06 56.2 34 76.5
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 4.6e-06 56.2 33 81.8
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 4.6e-06 56.2 34 76.5
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 4.6e-06 56.2 34 76.5
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 4.6e-06 56.2 143 34.3
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 6.0e-06 55.8 34 73.5
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 6.0e-06 55.8 31 80.6
EL10Ac8g20023 Beta vulgaris HOM05D007084 ORTHO05D008776 6.0e-06 55.8 32 71.9
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 6.0e-06 55.8 31 80.6
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 6.0e-06 55.8 31 80.6
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 6.0e-06 55.8 31 80.6
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 6.0e-06 55.8 31 80.6
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 6.0e-06 55.8 31 80.6
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 6.0e-06 55.8 31 80.6
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 6.0e-06 55.8 31 80.6
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 6.0e-06 55.8 31 80.6
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 6.0e-06 55.8 48 64.6
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 6.0e-06 55.8 34 76.5
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 6.0e-06 55.8 31 80.6
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 6.0e-06 55.8 34 76.5
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 7.9e-06 55.5 34 76.5


User provided reference genes

Program Settings