Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.4e-263 912.5 514 100.0
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 8.7e-245 850.1 510 93.9
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 9.6e-244 846.7 514 91.6
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.6e-243 845.9 514 90.7
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 2.8e-243 845.1 511 92.8
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.4e-242 842.0 514 93.0
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 6.9e-242 840.5 510 93.1
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 6.9e-242 840.5 510 92.5
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 2.5e-239 832.0 527 84.6
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 3.2e-239 831.6 514 90.9
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 9.3e-239 830.1 514 91.2
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 3.5e-238 828.2 509 90.0
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 4.3e-236 821.2 514 89.5
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 4.3e-236 821.2 513 90.6
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.7e-236 820.8 514 90.5
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 7.4e-236 820.5 514 91.2
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 9.7e-236 820.1 514 90.5
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 1.6e-235 819.3 513 90.4
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 2.8e-235 818.5 513 89.3
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 3.7e-235 818.1 513 90.6
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 4.8e-235 817.8 513 90.3
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 8.2e-235 817.0 511 88.8
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 1.4e-234 816.2 514 90.3
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 5.9e-233 810.8 514 89.1
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.0e-232 810.1 514 88.3
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.0e-232 810.1 514 88.3
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.0e-232 810.1 514 88.1
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.3e-232 809.7 510 90.6
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.7e-232 809.3 513 88.9
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 3.8e-232 808.1 512 89.6
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 5.0e-232 807.7 514 88.5
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 8.5e-232 807.0 514 89.1
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 1.4e-231 806.2 512 88.7
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 1.9e-231 805.8 511 87.5
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.9e-231 805.8 514 88.5
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 3.2e-231 805.1 514 83.9
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 4.2e-231 804.7 513 88.3
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 5.5e-231 804.3 514 89.3
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 7.2e-231 803.9 510 90.2
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.8e-229 799.3 542 84.1
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 3.0e-229 798.5 514 86.4
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.1e-228 796.6 514 87.5
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.3e-228 795.0 504 89.7
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 5.7e-228 794.3 514 86.2
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 1.3e-227 793.1 514 85.8
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 8.2e-227 790.4 514 86.4
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.8e-226 789.3 536 84.0
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 2.4e-226 788.9 514 86.4
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 2.4e-226 788.9 511 86.9
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 3.1e-226 788.5 514 86.6
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 4.1e-226 788.1 514 86.2
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 5.3e-226 787.7 511 86.9
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 9.1e-226 786.9 514 86.0
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.2e-225 786.6 513 87.3
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.5e-225 786.2 512 86.9
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.6e-225 785.4 514 87.0
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 4.5e-225 784.6 514 87.0
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 5.9e-225 784.3 514 86.8
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 1.0e-224 783.5 513 86.7
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.3e-224 783.1 511 87.5
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.3e-224 783.1 512 86.9
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.3e-224 783.1 514 85.4
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 1.7e-224 782.7 513 86.0
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 2.2e-224 782.3 514 84.6
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 2.9e-224 781.9 514 86.0
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 5.0e-224 781.2 514 86.0
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 2.5e-223 778.9 514 86.6
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 9.4e-223 776.9 504 85.5
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 3.6e-222 775.0 514 84.6
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 1.0e-221 773.5 511 81.4
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.8e-221 772.7 504 86.1
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 1.8e-221 772.7 504 85.9
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 8.8e-221 770.4 511 83.8
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 1.1e-220 770.0 511 85.3
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.1e-220 770.0 535 79.8
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 1.1e-220 770.0 512 85.2
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.0e-220 769.2 514 80.9
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 2.0e-220 769.2 514 85.4
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 3.3e-220 768.5 512 86.5
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 7.4e-220 767.3 511 82.8
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 9.7e-220 766.9 511 84.7
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 6.3e-219 764.2 513 82.8
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 8.2e-219 763.8 509 84.7
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 8.2e-219 763.8 509 84.7
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.8e-218 762.7 511 84.3
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 5.3e-218 761.1 514 85.0
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 3.5e-217 758.4 507 84.6
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 1.7e-216 756.1 515 82.9
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.9e-215 752.7 485 88.7
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 9.4e-215 750.4 551 75.9
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.7e-214 748.8 509 85.7
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 3.0e-213 745.3 514 83.3
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.2e-211 739.2 500 81.2
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 6.3e-211 737.6 520 81.7
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 8.2e-211 737.3 514 80.4
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.7e-208 729.6 484 87.8
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 1.3e-203 713.4 511 80.0
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 9.1e-202 707.2 557 72.9
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 4.5e-201 704.9 464 89.4
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.2e-200 702.6 514 76.8
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 2.9e-200 702.2 535 75.0
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 8.5e-200 700.7 514 74.3
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 2.1e-198 696.0 468 87.0
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 5.7e-196 688.0 514 75.3
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 7.0e-194 681.0 513 79.9
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 4.5e-193 678.3 525 76.6
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 4.0e-189 665.2 511 67.3
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 4.1e-186 655.2 435 84.4
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 2.1e-182 642.9 430 87.0
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 3.7e-179 632.1 428 84.1
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 3.6e-166 589.0 518 66.4
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 2.5e-159 566.2 414 80.2
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.7e-153 546.2 322 100.0
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 5.1e-152 542.0 511 61.3
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 9.6e-143 511.1 269 92.6
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 8.4e-131 471.5 254 91.7
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 4.8e-126 455.7 331 77.9
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 5.9e-116 422.2 385 61.0
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 3.6e-105 386.3 210 92.9
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 7.9e-105 385.2 210 92.4
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.7e-94 350.9 365 68.8
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 2.0e-84 317.4 206 86.4
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.4e-80 304.7 257 72.8
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 1.2e-73 281.6 523 44.2
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 2.9e-62 243.8 134 93.3
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.6e-60 238.0 526 34.2
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 1.1e-53 215.3 254 45.7
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 2.0e-47 194.5 99 87.9
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 3.3e-42 177.2 108 76.9
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 3.8e-38 163.7 80 93.8
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.7e-35 154.8 295 33.2
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 7.3e-34 149.4 80 92.5
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 1.4e-32 145.2 178 50.6
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 4.4e-31 140.2 137 60.6
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 3.8e-30 137.1 107 68.2
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 4.9e-30 136.7 100 68.0
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 4.9e-30 136.7 100 68.0
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.1e-26 125.6 70 85.7
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 8.1e-25 119.4 69 82.6
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 6.9e-24 116.3 64 82.8
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 6.9e-24 116.3 64 82.8
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.1e-20 104.8 56 82.1
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 7.9e-20 102.8 50 88.0
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 1.9e-18 98.2 56 73.2
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 8.1e-17 92.8 44 93.2
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.1e-16 92.4 47 97.9
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 2.4e-16 91.3 134 64.9
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 1.5e-15 88.6 44 88.6
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.6e-15 87.8 126 42.9
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 1.3e-11 75.5 105 41.9
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 3.9e-11 73.9 36 86.1
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 5.3e-08 63.5 60 58.3
PRCOL_00005022 Prasinoderma coloniale HOM05D001610 ORTHO05D002685 9.0e-08 62.8 308 31.5
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 1.3e-06 58.9 29 82.8
Lsat_1_v5_gn_3_52840 Lactuca sativa HOM05D004842 ORTHO05D005929 3.8e-06 57.4 35 71.4
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 5.0e-06 57.0 74 51.4
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 8.5e-06 56.2 35 68.6


User provided reference genes

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