Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 3197.1 1606 100.0
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2362.8 1605 73.8
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2354.7 1619 74.2
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2344.3 1539 77.0
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2314.3 1535 75.6
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2292.7 1607 73.2
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2244.9 1624 71.6
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2234.9 1653 69.4
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2223.7 1615 70.5
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2213.3 1606 69.8
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2204.5 1620 69.0
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2200.6 1623 70.5
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2197.9 1776 65.7
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2192.2 1627 69.9
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2185.2 1607 69.6
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2183.7 1622 69.1
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2182.9 1626 68.6
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2180.2 1628 68.7
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2175.6 1628 68.6
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 2146.3 1683 67.0
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2146.3 1624 68.0
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2143.2 1596 68.7
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2137.5 1603 68.6
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 2134.4 1281 83.1
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2097.0 1604 66.8
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2090.8 1613 66.3
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2088.5 1613 66.3
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2085.1 1604 66.5
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2084.7 1605 66.4
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2077.0 1574 67.3
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2052.7 1608 66.1
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2047.3 1592 65.8
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2046.9 1612 65.6
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2037.7 1631 65.2
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2037.3 1572 66.9
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2035.0 1591 66.2
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2033.8 1603 66.1
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2029.6 1611 65.3
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2028.8 1610 65.3
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2027.7 1632 65.1
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2027.7 1611 65.7
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 2023.1 1618 64.3
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2015.7 1671 63.4
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2012.7 1579 66.2
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2009.6 1619 65.0
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2008.8 1598 65.3
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2004.9 1587 66.2
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1996.1 1608 64.4
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1995.3 1612 65.0
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1991.9 1610 64.0
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1986.8 1327 76.0
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1962.6 1570 65.2
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1956.0 1608 63.2
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1947.9 1631 61.6
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1947.2 1680 61.5
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1937.2 1468 67.4
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1935.2 1638 62.2
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1917.9 1616 62.3
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1909.8 1605 61.9
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1897.9 1623 62.4
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1892.9 1616 60.6
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1892.9 1604 62.1
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1887.1 1643 60.3
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1879.4 1607 61.7
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1862.0 1629 59.7
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1855.9 1618 60.4
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1847.0 1627 60.2
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1841.2 1673 59.3
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1840.1 1644 59.5
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1828.5 1637 58.8
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1826.2 1749 56.7
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1824.7 1593 60.2
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1817.7 1626 59.2
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1814.3 1622 58.9
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1814.3 1619 59.0
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1812.0 1592 59.4
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1811.6 1616 59.7
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1810.0 1622 58.8
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1810.0 1626 58.7
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1808.5 1602 58.9
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1807.0 1621 59.0
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1805.4 1619 58.7
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1801.6 1606 58.8
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1801.2 1597 59.2
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1800.0 1617 58.6
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1799.3 1579 60.9
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1799.3 1579 60.9
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1798.5 1622 58.6
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1791.9 1577 60.0
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1789.2 1639 58.2
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1788.5 1626 58.9
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1784.6 1532 60.5
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1782.7 1608 58.4
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1763.4 1631 57.6
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1731.5 1239 71.5
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1725.7 1594 57.8
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1702.2 1597 56.9
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1629.0 1472 58.5
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1527.7 1100 72.7
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1493.0 1636 50.2
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1281.5 646 100.0
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1187.2 757 79.4
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1132.1 564 99.8
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1114.4 1727 39.8
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 0.0e+00 1095.5 1552 43.0
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1094.0 894 63.3
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 6.8e-304 1048.1 1541 39.6
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 5.4e-301 1038.5 1639 41.2
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 8.3e-294 1014.6 1695 38.5
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.9e-293 1013.4 1694 37.5
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 1.6e-292 1010.4 958 57.3
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 1.1e-266 924.5 785 60.1
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 9.0e-248 861.7 736 62.8
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.0e-243 848.2 760 57.8
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.0e-227 795.0 731 56.8
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 3.8e-214 750.0 1466 34.5
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 5.9e-207 726.1 1778 30.0
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.7e-201 708.0 1167 39.4
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.1e-181 642.1 542 61.4
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 2.9e-169 600.9 466 67.2
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 2.1e-156 558.1 584 53.8
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 7.6e-146 523.1 661 45.8
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 9.0e-131 473.0 555 48.6
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.7e-129 468.8 568 45.1
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 5.0e-129 467.2 549 48.1
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.9e-112 412.1 337 63.5
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 1.2e-98 366.3 287 67.2
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-88 333.2 464 42.7
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 7.3e-72 277.3 377 43.8
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 6.0e-66 257.7 249 52.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 6.8e-62 244.2 380 41.3
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.6e-55 223.0 283 40.3
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 9.3e-51 207.2 190 54.7
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 9.0e-46 190.7 347 39.5
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.2e-45 190.3 425 34.1
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 2.5e-40 172.6 160 52.5
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 9.6e-40 170.6 169 54.4
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.2e-37 163.7 137 58.4
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 3.4e-37 162.2 159 51.6
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 6.4e-36 157.9 1206 21.8
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 8.4e-36 157.5 163 47.9
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.6e-34 153.3 223 39.5
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 3.0e-33 149.1 226 40.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.8e-31 142.5 108 65.7
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 1.2e-29 137.1 121 59.5
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 4.5e-29 135.2 372 31.5
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 7.6e-29 134.4 85 78.8
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.6e-26 126.7 94 70.2
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.7e-26 125.9 118 55.9
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 5.7e-24 118.2 80 68.8
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 9.7e-24 117.5 140 50.7
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 9.7e-24 117.5 532 25.2
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.8e-14 86.7 56 73.2
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 5.9e-13 81.6 52 71.2
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 3.2e-11 75.9 59 66.1
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 3.2e-11 75.9 142 37.3
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 4.2e-11 75.5 65 61.5
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 4.2e-11 75.5 139 36.0
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 7.2e-11 74.7 73 53.4
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 2.6e-08 66.2 157 33.8


User provided reference genes

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