Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0070F.1_g037600 Hydrangea macrophylla HOM05D002923 ORTHO05D025743 2.6e-122 442.2 243 100.0
Hma1.2p1_0452F.1_g155840 Hydrangea macrophylla HOM05D002923 ORTHO05D003484 8.4e-73 277.7 205 78.0
Hma1.2p1_0244F.1_g101180 Hydrangea macrophylla HOM05D002923 ORTHO05D003484 1.6e-55 220.3 267 55.4
Haze_20942 Corylus avellana HOM05D002923 ORTHO05D003484 1.1e-51 207.6 280 49.3
Cfa017260 Carpinus fangiana HOM05D002923 ORTHO05D003484 3.5e-50 202.6 279 48.0
TWI74G0041 Tripterygium wilfordii HOM05D002923 ORTHO05D003484 3.5e-50 202.6 306 44.8
Ciclev10011119m.g Citrus clementina HOM05D002923 ORTHO05D003484 1.1e-48 197.6 278 48.6
ClCG04G007280 Citrullus lanatus HOM05D002923 ORTHO05D003484 2.1e-47 193.4 297 45.5
DCAR_018734 Daucus carota HOM05D002923 ORTHO05D003484 6.1e-47 191.8 296 44.6
FAN09G2253 Fragaria x ananassa HOM05D002923 ORTHO05D003484 1.8e-46 190.3 276 46.7
PGSC0003DMG400020325 Solanum tuberosum HOM05D002923 ORTHO05D003484 2.3e-46 189.9 296 41.6
MBI05_g03437_MAGBIO Magnolia biondii HOM05D002923 ORTHO05D003484 1.1e-45 187.6 247 46.6
FAN02G1394 Fragaria x ananassa HOM05D002923 ORTHO05D003484 2.6e-45 186.4 275 46.5
MELO3C003221.2 Cucumis melo HOM05D002923 ORTHO05D003484 5.7e-45 185.3 307 43.6
Solyc09g013080.3 Solanum lycopersicum HOM05D002923 ORTHO05D003484 5.7e-45 185.3 297 42.1
DCAR_015460 Daucus carota HOM05D002923 ORTHO05D003484 7.4e-45 184.9 296 44.6
FvH4_6g12150 Fragaria vesca HOM05D002923 ORTHO05D003484 9.7e-45 184.5 274 46.0
FAN05G4887 Fragaria x ananassa HOM05D002923 ORTHO05D003484 9.7e-45 184.5 274 46.0
FAN14G4981 Fragaria x ananassa HOM05D002923 ORTHO05D003484 9.7e-45 184.5 274 46.0
FAN14G3461 Fragaria x ananassa HOM05D002923 ORTHO05D003484 2.2e-44 183.3 274 45.6
RcHm_v2.0_Chr3g0463941 Rosa chinensis HOM05D002923 ORTHO05D003484 4.8e-44 182.2 274 46.7
Cpa.g.sc56.107 Carica papaya HOM05D002923 ORTHO05D003484 3.1e-43 179.5 279 44.4
Sabra16G0107100 Salix brachista HOM05D002923 ORTHO05D003484 2.0e-42 176.8 267 47.2
Prupe.6G270200 Prunus persica HOM05D002923 ORTHO05D003484 4.5e-42 175.6 273 44.7
Oeu040801.1 Olea europaea HOM05D002923 ORTHO05D003484 7.7e-42 174.9 285 42.1
Sed0027710 Sechium edule HOM05D002923 ORTHO05D003484 1.0e-41 174.5 306 42.5
CANSAT35G0533 Cannabis sativa HOM05D002923 ORTHO05D003484 1.7e-41 173.7 274 43.8
Manes.08G087100 Manihot esculenta HOM05D002923 ORTHO05D003484 2.9e-41 172.9 277 45.5
Duzib093G0767 Durio zibethinus HOM05D002923 ORTHO05D003484 7.2e-40 168.3 277 44.4
HanXRQChr15g0463991 Helianthus annuus HOM05D002923 ORTHO05D003484 3.6e-39 166.0 298 39.6
Oeu028727.1 Olea europaea HOM05D002923 ORTHO05D003484 6.1e-39 165.2 268 41.4
Manes.09G101700 Manihot esculenta HOM05D002923 ORTHO05D003484 8.0e-39 164.9 277 44.4
Aqoxy1G00729 Aquilegia oxysepala HOM05D002923 ORTHO05D003484 5.2e-38 162.2 292 41.1
Dinv37086 Davidia involucrata HOM05D002923 ORTHO05D003484 6.8e-38 161.8 268 44.8
Nitab4.5_0000008g0600 Nicotiana tabacum HOM05D002923 ORTHO05D003484 6.8e-38 161.8 271 40.6
SalBow5G1337 Salvia bowleyana HOM05D002923 ORTHO05D003484 6.8e-38 161.8 275 42.2
CAN.G284.8 Capsicum annuum HOM05D002923 ORTHO05D003484 1.2e-37 161.0 261 40.6
Duzib128G0471 Durio zibethinus HOM05D002923 ORTHO05D003484 3.4e-37 159.5 280 42.1
SalBow5G5371 Salvia bowleyana HOM05D002923 ORTHO05D003484 3.4e-37 159.5 264 40.5
HanXRQChr10g0286971 Helianthus annuus HOM05D002923 ORTHO05D003484 5.7e-37 158.7 299 39.5
SalBow1G6626 Salvia bowleyana HOM05D002923 ORTHO05D003484 9.7e-37 157.9 263 40.7
Migut.L01991 Erythranthe guttata HOM05D002923 ORTHO05D003484 2.2e-36 156.8 266 43.2
Rhsim05G0205300 Rhododendron simsii HOM05D002923 ORTHO05D003484 2.2e-36 156.8 259 43.6
PGR004G1301 Punica granatum HOM05D002923 ORTHO05D003484 3.7e-36 156.0 277 42.2
MSTRG.26796 Avicennia marina HOM05D002923 ORTHO05D003484 4.8e-36 155.6 263 40.7
AUR62042410 Chenopodium quinoa HOM05D002923 ORTHO05D003484 6.3e-36 155.2 280 39.3
Eucgr.B02770 Eucalyptus grandis HOM05D002923 ORTHO05D003484 8.3e-36 154.8 284 39.4
Sed0008698 Sechium edule HOM05D002923 ORTHO05D003484 8.3e-36 154.8 285 41.8
TWI53G0230 Tripterygium wilfordii HOM05D002923 ORTHO05D003484 1.4e-35 154.1 277 40.1
Eucgr.B02769 Eucalyptus grandis HOM05D002923 ORTHO05D003484 2.4e-35 153.3 280 39.6
AUR62037670 Chenopodium quinoa HOM05D002923 ORTHO05D003484 4.1e-35 152.5 280 39.3
Lalb_Chr01g0022891 Lupinus albus HOM05D002923 ORTHO05D003484 4.1e-35 152.5 292 38.7
Thecc.05G023000 Theobroma cacao HOM05D002923 ORTHO05D003484 2.0e-34 150.2 279 41.9
Potri.006G095800 Populus trichocarpa HOM05D002923 ORTHO05D003484 2.7e-34 149.8 259 43.2
CSS0024926 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 3.5e-34 149.4 272 41.2
ECA247G2565 Erigeron canadensis HOM05D002923 ORTHO05D003484 5.9e-34 148.7 301 38.2
Sc01g0006730 Simmondsia chinensis HOM05D002923 ORTHO05D003484 5.9e-34 148.7 253 41.1
Migut.J00231 Erythranthe guttata HOM05D002923 ORTHO05D003484 1.3e-33 147.5 262 40.1
AUR62041363 Chenopodium quinoa HOM05D002923 ORTHO05D003484 2.9e-33 146.4 269 38.7
Lj1g0012741 Lotus japonicus HOM05D002923 ORTHO05D003484 2.9e-33 146.4 306 37.6
COL.COLO4_14614 Corchorus olitorius HOM05D002923 ORTHO05D003484 8.5e-33 144.8 247 41.7
Lsat_1_v5_gn_9_35780 Lactuca sativa HOM05D002923 ORTHO05D003484 8.5e-33 144.8 297 37.0
Nitab4.5_0006254g0020 Nicotiana tabacum HOM05D002923 ORTHO05D003484 1.9e-32 143.7 269 38.7
Cc06_g01720 Coffea canephora HOM05D002923 ORTHO05D003484 1.2e-31 141.0 292 39.0
CiPaw.10G154100 Carya illinoinensis HOM05D002923 ORTHO05D003484 2.1e-31 140.2 280 38.6
Gohir.A13G086290 Gossypium hirsutum HOM05D002923 ORTHO05D003484 1.4e-30 137.5 281 39.1
Lalb_Chr03g0042951 Lupinus albus HOM05D002923 ORTHO05D003484 1.8e-30 137.1 243 37.9
Sopen09g006920 Solanum pennellii HOM05D002923 ORTHO05D003484 1.5e-29 134.0 296 34.8
Ah.12g060020 Amaranthus hybridus HOM05D002923 ORTHO05D003484 2.0e-29 133.7 307 34.9
Ca_26813_v3 Cicer arietinum L. HOM05D002923 ORTHO05D003484 3.4e-29 132.9 308 36.0
Gorai.002G148400 Gossypium raimondii HOM05D002923 ORTHO05D003484 4.4e-29 132.5 265 40.4
Gohir.D13G092201 Gossypium hirsutum HOM05D002923 ORTHO05D003484 9.8e-29 131.3 284 38.7
Potri.016G110500 Populus trichocarpa HOM05D002923 ORTHO05D003484 9.8e-29 131.3 259 40.5
Nn2g14845 Nelumbo nucifera HOM05D002923 ORTHO05D003484 1.3e-28 131.0 266 37.6
MSTRG.19035 Avicennia marina HOM05D002923 ORTHO05D003484 2.8e-28 129.8 267 37.8
MD04G1146400 Malus domestica HOM05D002923 ORTHO05D003484 2.8e-28 129.8 274 37.2
TPR.G1591 Trifolium pratense HOM05D002923 ORTHO05D003484 3.7e-28 129.4 254 35.4
Gorai.012G111400 Gossypium raimondii HOM05D002923 ORTHO05D003484 5.4e-27 125.6 301 34.9
Atru.chr8.2139 Acer truncatum HOM05D002923 ORTHO05D003484 9.1e-27 124.8 137 56.2
Gohir.D04G128300 Gossypium hirsutum HOM05D002923 ORTHO05D003484 2.0e-26 123.6 301 34.6
SGA_v2.0_scaffold106G30526 Striga asiatica HOM05D002923 ORTHO05D003484 2.7e-26 123.2 268 35.1
Actinidia29136 Actinidia chinensis HOM05D002923 ORTHO05D003484 5.9e-26 122.1 210 40.0
Sabra06G0073700 Salix brachista HOM05D002923 ORTHO05D003484 1.0e-25 121.3 258 38.4
TAR623G0864 Trochodendron aralioides HOM05D002923 ORTHO05D025743 1.7e-25 120.6 284 37.7
arahy.Tifrunner.gnm1.ann1.70V125 Arachis hypogaea HOM05D002923 ORTHO05D003484 5.0e-25 119.0 306 33.7
TAR369G0530 Trochodendron aralioides HOM05D002923 ORTHO05D003484 6.6e-25 118.6 274 38.0
CsaV3_4G025950 Cucumis sativus L. HOM05D002923 ORTHO05D003484 5.5e-24 115.5 306 34.6
MD12G1159600 Malus domestica HOM05D002923 ORTHO05D003484 7.2e-24 115.2 275 35.6
Psat0s1978g0280 Pisum sativum HOM05D002923 ORTHO05D003484 4.7e-23 112.5 283 35.0
BcaB01g03731 Brassica carinata HOM05D002923 ORTHO05D003484 1.0e-22 111.3 273 32.6
THA.LOC104806526 Tarenaya hassleriana HOM05D002923 ORTHO05D003484 1.8e-22 110.5 247 37.2
HanXRQChr10g0291431 Helianthus annuus HOM05D002923 ORTHO05D003484 2.3e-22 110.2 211 36.5
Phvul.008G108700 Phaseolus vulgaris HOM05D002923 ORTHO05D003484 3.0e-22 109.8 312 30.8
VMungo1383G3014 Vigna mungo HOM05D002923 ORTHO05D003484 1.5e-21 107.5 296 31.8
Glyma.18G195700 Glycine max HOM05D002923 ORTHO05D003484 5.7e-21 105.5 274 34.7
Nn2g13595 Nelumbo nucifera HOM05D002923 ORTHO05D003484 1.3e-20 104.4 274 33.9
CiPaw.09G205400 Carya illinoinensis HOM05D002923 ORTHO05D003484 2.2e-20 103.6 239 35.6
BcaB02g09223 Brassica carinata HOM05D002923 ORTHO05D003484 4.9e-20 102.4 314 29.6
Glyma.18G195900 Glycine max HOM05D002923 ORTHO05D003484 1.1e-19 101.3 248 36.7
ATR0618G266 Amborella trichopoda HOM05D002923 ORTHO05D003484 1.4e-19 100.9 252 31.7
CARHR132610 Cardamine hirsuta HOM05D002923 ORTHO05D003484 4.1e-19 99.4 303 30.7
SalBow5G3414 Salvia bowleyana HOM05D002923 ORTHO05D003484 5.4e-19 99.0 139 45.3
arahy.Tifrunner.gnm1.ann1.45ZUWH Arachis hypogaea HOM05D002923 ORTHO05D003484 7.0e-19 98.6 286 32.9
Actinidia13785 Actinidia chinensis HOM05D002923 ORTHO05D003484 9.2e-19 98.2 205 34.6
Gohir.A04G087900 Gossypium hirsutum HOM05D002923 ORTHO05D003484 1.6e-18 97.4 274 33.2
Medtr7g066870 Medicago truncatula HOM05D002923 ORTHO05D003484 2.0e-18 97.1 277 32.1
A05p07970 Brassica napus HOM05D002923 ORTHO05D003484 2.7e-18 96.7 234 32.9
Aa31LG5G23670 Aethionema arabicum HOM05D002923 ORTHO05D003484 1.0e-17 94.7 244 32.8
Glyma.18G196000 Glycine max HOM05D002923 ORTHO05D003484 1.3e-17 94.4 248 34.7
BraA05t19762Z Brassica rapa HOM05D002923 ORTHO05D003484 2.3e-17 93.6 230 32.6
CDE03G0020 Ceratophyllum demersum HOM05D002923 ORTHO05D003484 3.9e-17 92.8 278 31.3
Dinv35516 Davidia involucrata HOM05D002923 ORTHO05D003484 1.5e-16 90.9 244 36.9
CSS0010473 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 3.3e-16 89.7 209 36.4
BcaC01g05570 Brassica carinata HOM05D002923 ORTHO05D003484 4.3e-16 89.4 308 29.2
C03p24770 Brassica napus HOM05D002923 ORTHO05D003484 4.3e-16 89.4 308 29.2
BolC3t14866H Brassica oleracea HOM05D002923 ORTHO05D003484 4.3e-16 89.4 308 29.2
Peaxi162Scf00141g00125 Petunia axillaris HOM05D002923 ORTHO05D003484 7.3e-16 88.6 261 32.2
AT2G38040 Arabidopsis thaliana HOM05D002923 ORTHO05D003484 4.7e-15 85.9 278 28.1
Dinv28596 Davidia involucrata HOM05D002923 ORTHO05D003484 4.7e-15 85.9 278 32.7
THA.LOC104805781 Tarenaya hassleriana HOM05D002923 ORTHO05D003484 6.1e-15 85.5 232 31.5
Thhalv10016287m.g Eutrema salsugineum HOM05D002923 ORTHO05D003484 8.0e-15 85.1 310 27.7
Sp4g20360 Schrenkiella parvula HOM05D002923 ORTHO05D003484 8.0e-15 85.1 303 28.7
BraA03t11342Z Brassica rapa HOM05D002923 ORTHO05D003484 5.8e-13 79.0 308 27.6
PSO384G4499 Papaver somniferum HOM05D002923 ORTHO05D003484 5.8e-13 79.0 279 30.1
Dinv32457 Davidia involucrata HOM05D002923 ORTHO05D003484 1.3e-12 77.8 244 31.6
PSO339G5831 Papaver somniferum HOM05D002923 ORTHO05D003484 1.3e-12 77.8 279 30.1
Ah.05g176470 Amaranthus hybridus HOM05D002923 ORTHO05D003484 1.7e-12 77.4 277 30.7
CiPaw.02G028800 Carya illinoinensis HOM05D002923 ORTHO05D003484 8.3e-12 75.1 240 28.3
AL4G35040 Arabidopsis lyrata HOM05D002923 ORTHO05D003484 4.1e-11 72.8 278 26.3
Duzib138G0954 Durio zibethinus HOM05D002923 ORTHO05D003484 4.1e-11 72.8 281 27.8
TAR629G1449 Trochodendron aralioides HOM05D002923 ORTHO05D003484 5.4e-11 72.4 280 27.5
CSS0015910 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 1.2e-10 71.2 241 29.5
TAR374G0869 Trochodendron aralioides HOM05D002923 ORTHO05D003484 1.6e-10 70.9 271 29.2
BcaC02g11947 Brassica carinata HOM05D002923 ORTHO05D003484 6.0e-10 68.9 235 28.1
C04p09620 Brassica napus HOM05D002923 ORTHO05D003484 6.0e-10 68.9 235 28.1
BolC4t22569H Brassica oleracea HOM05D002923 ORTHO05D003484 6.0e-10 68.9 235 28.1
FAN01G2587 Fragaria x ananassa HOM05D002923 ORTHO05D003484 6.0e-10 68.9 289 27.7
Hma1.2p1_0033F.1_g020360 Hydrangea macrophylla HOM05D002923 ORTHO05D003484 7.8e-10 68.6 286 28.0
CSS0019607 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 1.0e-09 68.2 241 29.0
Oeu014666.1 Olea europaea HOM05D002923 ORTHO05D003484 1.0e-09 68.2 245 27.8
Nitab4.5_0009210g0030 Nicotiana tabacum HOM05D002923 ORTHO05D003484 1.3e-09 67.8 266 27.8
FvH4_7g13820 Fragaria vesca HOM05D002923 ORTHO05D003484 1.7e-09 67.4 289 27.3
FAN06G5053 Fragaria x ananassa HOM05D002923 ORTHO05D003484 1.7e-09 67.4 289 27.3
A03p21030 Brassica napus HOM05D002923 ORTHO05D003484 2.3e-09 67.0 304 27.0
PSO478G2799 Papaver somniferum HOM05D002923 ORTHO05D003484 1.1e-08 64.7 252 27.4
PSO782G3437 Papaver somniferum HOM05D002923 ORTHO05D003484 1.9e-08 63.9 238 29.0
Haze_15468 Corylus avellana HOM05D002923 ORTHO05D003484 5.6e-08 62.4 207 30.0
AUR62033336 Chenopodium quinoa HOM05D002923 ORTHO05D003484 7.3e-08 62.0 275 28.4
Eucgr.D02269 Eucalyptus grandis HOM05D002923 ORTHO05D003484 7.3e-08 62.0 279 25.1
Lalb_Chr19g0124831 Lupinus albus HOM05D002923 ORTHO05D003484 7.3e-08 62.0 117 39.3
unitig_578.g15891 Utricularia gibba HOM05D002923 ORTHO05D003484 1.2e-07 61.2 136 34.6
Nitab4.5_0002160g0030 Nicotiana tabacum HOM05D002923 ORTHO05D003484 1.6e-07 60.8 242 29.3
ClCG05G001660 Citrullus lanatus HOM05D002923 ORTHO05D003484 2.1e-07 60.5 248 26.6
Peaxi162Scf00056g00313 Petunia axillaris HOM05D002923 ORTHO05D003484 2.1e-07 60.5 280 27.5
AUR62004321 Chenopodium quinoa HOM05D002923 ORTHO05D003484 3.6e-07 59.7 288 29.5
FAN03G1194 Fragaria x ananassa HOM05D002923 ORTHO05D003484 3.6e-07 59.7 283 26.5
Sed0012599 Sechium edule HOM05D002923 ORTHO05D003484 4.7e-07 59.3 250 27.2
EL10Ac7g17118 Beta vulgaris HOM05D002923 ORTHO05D003484 6.2e-07 58.9 305 25.6
Lj3A957T37 Lonicera japonica HOM05D002923 ORTHO05D003484 1.1e-06 58.2 178 30.3
FAN06G1203 Fragaria x ananassa HOM05D002923 ORTHO05D003484 1.4e-06 57.8 260 27.3
vmacro08607 Vaccinium macrocarpon HOM05D002923 ORTHO05D003484 1.8e-06 57.4 111 41.4
Carub.0004s2001 Capsella rubella HOM05D002923 ORTHO05D003484 2.3e-06 57.0 283 24.0
Cpa.g.sc18.229 Carica papaya HOM05D002923 ORTHO05D003484 2.3e-06 57.0 246 28.5
Lalb_Chr19g0124821 Lupinus albus HOM05D002923 ORTHO05D025743 2.3e-06 57.0 139 33.1
MELO3C006123.2 Cucumis melo HOM05D002923 ORTHO05D003484 5.2e-06 55.8 235 27.2


User provided reference genes

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