Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 6.4e-213 743.8 376 100.0
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.8e-210 735.7 371 100.0
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 8.5e-189 663.7 374 86.1
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 5.5e-188 661.0 372 85.8
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 5.5e-188 661.0 374 84.5
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 9.4e-188 660.2 372 85.8
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 9.4e-188 660.2 372 85.5
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 4.6e-187 657.9 372 85.2
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 4.6e-187 657.9 372 85.5
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 7.9e-187 657.1 372 85.2
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.0e-186 656.8 372 84.9
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 5.1e-186 654.4 372 84.1
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 8.8e-186 653.7 372 84.4
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 2.5e-185 652.1 372 84.4
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 5.7e-185 651.0 372 83.6
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 1.3e-184 649.8 379 83.6
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 1.7e-184 649.4 372 84.7
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 2.2e-184 649.0 372 82.8
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 4.8e-184 647.9 371 84.1
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 8.2e-184 647.1 374 82.9
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.4e-183 646.4 372 84.1
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 3.1e-183 645.2 374 82.6
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 3.1e-183 645.2 372 84.9
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 5.3e-183 644.4 372 82.8
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 5.3e-183 644.4 374 83.4
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 5.3e-183 644.4 374 83.2
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 6.9e-183 644.0 372 82.3
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 6.9e-183 644.0 372 83.3
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 9.1e-183 643.7 372 82.3
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 9.1e-183 643.7 374 82.6
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 9.1e-183 643.7 373 82.8
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 1.5e-182 642.9 374 84.0
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 2.0e-182 642.5 374 82.9
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 2.6e-182 642.1 372 82.5
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 5.9e-182 641.0 371 82.7
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 7.7e-182 640.6 372 82.8
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 1.0e-181 640.2 372 82.8
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.0e-181 640.2 372 82.8
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.0e-181 640.2 372 82.8
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.0e-181 640.2 372 82.8
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.0e-181 640.2 374 81.8
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 1.3e-181 639.8 374 81.3
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 2.2e-181 639.0 370 83.5
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.2e-181 639.0 371 82.2
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 2.9e-181 638.6 371 82.7
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 3.8e-181 638.3 371 81.7
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 3.8e-181 638.3 372 82.8
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 5.0e-181 637.9 372 81.2
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 5.0e-181 637.9 372 82.5
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 6.5e-181 637.5 372 83.1
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 1.1e-180 636.7 371 82.5
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.4e-180 636.3 372 82.8
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 1.9e-180 636.0 372 83.1
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 2.5e-180 635.6 370 82.7
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 2.5e-180 635.6 372 81.7
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 4.2e-180 634.8 372 82.3
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 5.5e-180 634.4 372 82.3
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 7.2e-180 634.0 372 80.9
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.2e-179 633.3 375 81.6
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 1.6e-179 632.9 372 82.5
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 2.7e-179 632.1 374 81.6
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.7e-179 632.1 375 81.6
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 3.6e-179 631.7 371 81.7
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 1.0e-178 630.2 375 81.3
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 1.0e-178 630.2 375 81.6
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 3.0e-178 628.6 371 81.9
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 5.1e-178 627.9 372 82.0
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 5.1e-178 627.9 372 80.6
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 5.1e-178 627.9 375 81.1
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 8.8e-178 627.1 371 80.3
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.1e-177 626.7 374 82.9
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 1.5e-177 626.3 373 81.2
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 2.6e-177 625.5 372 80.6
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 3.3e-177 625.2 372 80.1
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 4.4e-177 624.8 372 82.0
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 5.7e-177 624.4 371 80.3
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 2.8e-176 622.1 372 82.8
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 2.8e-176 622.1 373 80.4
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 3.7e-176 621.7 371 80.9
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.4e-175 619.8 386 79.0
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 2.4e-175 619.0 373 81.2
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 4.1e-175 618.2 375 80.0
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.2e-174 616.7 370 79.7
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.0e-174 615.9 371 80.9
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 3.5e-174 615.1 372 78.5
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 5.0e-173 611.3 339 88.2
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 6.5e-173 610.9 364 80.8
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 7.2e-172 607.4 465 67.3
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.2e-171 606.7 371 79.8
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 2.7e-171 605.5 372 79.0
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 8.8e-170 600.5 374 77.0
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.5e-169 599.7 386 77.2
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.6e-169 599.0 375 78.1
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 2.6e-169 599.0 370 77.3
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 3.7e-168 595.1 371 78.4
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.1e-167 593.6 372 79.6
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 2.4e-167 592.4 373 77.7
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 2.1e-163 579.3 376 77.7
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 1.7e-152 543.1 372 72.0
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.4e-151 540.0 371 71.2
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 4.0e-138 495.4 372 70.7
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 4.3e-132 475.3 369 61.0
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 2.2e-128 463.0 369 59.9
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 2.8e-123 446.0 374 57.5
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 4.7e-123 445.3 370 58.9
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 5.8e-121 438.3 252 84.1
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.2e-115 420.6 252 82.5
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 3.9e-101 372.5 255 72.9
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 3.8e-96 355.9 412 46.6
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.1e-95 354.4 370 49.5
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 1.3e-88 330.9 372 50.3
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.6e-86 323.9 418 44.5
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.5e-86 322.8 387 49.6
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 7.9e-86 321.6 373 49.3
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 1.8e-85 320.5 373 49.3
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.5e-84 316.6 373 48.8
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 3.3e-84 316.2 176 84.1
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 3.9e-77 292.7 304 54.3
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 4.8e-75 285.8 169 79.9
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.0e-72 278.1 376 45.5
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.3e-67 261.2 413 38.7
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.0e-45 188.3 150 65.3
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.6e-38 164.5 138 62.3
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 4.0e-29 133.3 76 82.9
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.5e-23 114.8 104 62.5
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.5e-23 114.0 118 49.2
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.6e-22 111.3 105 59.0
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 6.4e-19 99.4 58 81.0
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 8.3e-11 72.4 72 56.9
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 7.3e-07 59.3 37 73.0
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 1.6e-06 58.2 37 81.1


User provided reference genes

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