Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 1.8e-57 225.7 113 100.0
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 1.7e-52 209.1 113 92.9
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 4.1e-30 134.8 81 85.2
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 9.2e-30 133.7 73 91.8
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 7.8e-21 104.0 73 74.0
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 9.5e-19 97.1 69 73.9
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 5.2e-17 91.3 66 69.7
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 5.8e-16 87.8 73 61.6
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 5.8e-16 87.8 68 63.2
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 5.8e-16 87.8 68 63.2
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 7.5e-16 87.4 109 48.6
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 9.8e-16 87.0 81 58.0
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 2.2e-15 85.9 79 60.8
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 3.7e-15 85.1 73 58.9
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 3.7e-15 85.1 68 60.3
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 8.3e-15 84.0 75 62.7
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 8.3e-15 84.0 78 61.5
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 1.4e-14 83.2 78 59.0
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 2.4e-14 82.4 78 59.0
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 3.2e-14 82.0 62 67.7
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 3.2e-14 82.0 62 67.7
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 5.4e-14 81.3 91 53.8
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 5.4e-14 81.3 62 66.1
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 7.0e-14 80.9 62 66.1
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 1.6e-13 79.7 81 54.3
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 7.8e-13 77.4 66 62.1
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 1.7e-12 76.3 71 57.7
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 3.9e-12 75.1 62 56.5
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 6.6e-12 74.3 80 51.2
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 6.6e-12 74.3 79 50.6
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.1e-11 73.6 83 49.4
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 1.5e-11 73.2 73 50.7
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.5e-11 73.2 60 56.7
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 1.9e-11 72.8 63 57.1
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.9e-11 72.8 63 57.1
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.9e-11 72.8 62 54.8
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 2.5e-11 72.4 62 59.7
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 2.5e-11 72.4 67 59.7
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 2.5e-11 72.4 67 61.2
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 3.3e-11 72.0 58 69.0
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 3.3e-11 72.0 78 55.1
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 4.3e-11 71.6 72 55.6
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 5.6e-11 71.2 60 61.7
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 7.3e-11 70.9 62 56.5
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 7.3e-11 70.9 80 48.8
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 7.3e-11 70.9 85 48.2
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 7.3e-11 70.9 75 57.3
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 9.5e-11 70.5 67 53.7
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 9.5e-11 70.5 67 53.7
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 9.5e-11 70.5 63 55.6
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 9.5e-11 70.5 81 53.1
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 1.2e-10 70.1 74 56.8
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 1.2e-10 70.1 76 52.6
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.6e-10 69.7 58 65.5
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 1.6e-10 69.7 78 50.0
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 2.1e-10 69.3 62 61.3
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 2.1e-10 69.3 72 54.2
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 2.8e-10 68.9 60 63.3
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 3.6e-10 68.6 59 62.7
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 3.6e-10 68.6 77 53.2
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 4.7e-10 68.2 72 52.8
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 8.1e-10 67.4 71 53.5
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 8.1e-10 67.4 62 56.5
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 8.1e-10 67.4 59 62.7
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 8.1e-10 67.4 74 55.4
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-09 66.6 79 49.4
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-09 66.6 79 49.4
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 1.4e-09 66.6 68 50.0
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 2.3e-09 65.9 83 45.8
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 5.2e-09 64.7 59 59.3
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 6.8e-09 64.3 79 48.1
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.8e-09 64.3 79 48.1
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.8e-09 64.3 79 48.1
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 6.8e-09 64.3 71 45.1
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 6.8e-09 64.3 57 57.9
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 8.9e-09 63.9 79 48.1
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 8.9e-09 63.9 79 48.1
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 1.2e-08 63.5 58 58.6
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.2e-08 63.5 79 48.1
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.2e-08 63.5 79 48.1
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 2.0e-08 62.8 77 48.1
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 2.6e-08 62.4 59 55.9
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 2.6e-08 62.4 56 58.9
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 2.6e-08 62.4 54 66.7
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 3.4e-08 62.0 56 58.9
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 4.4e-08 61.6 81 48.1
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 7.5e-08 60.8 75 46.7
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 7.5e-08 60.8 56 55.4
ATR0767G212 Amborella trichopoda HOM05D006948 ORTHO05D008703 1.3e-07 60.1 69 52.2
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 1.7e-07 59.7 60 55.0
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 2.2e-07 59.3 55 60.0
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 4.9e-07 58.2 58 55.2
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.1e-06 57.0 58 53.4
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.1e-06 57.0 79 45.6
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 1.1e-06 57.0 57 57.9
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 1.4e-06 56.6 57 54.4
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.4e-06 56.6 79 45.6
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 1.9e-06 56.2 57 54.4
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 3.2e-06 55.5 48 60.4
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 5.4e-06 54.7 52 65.4
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 5.4e-06 54.7 54 57.4
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 5.4e-06 54.7 73 46.6
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 7.1e-06 54.3 56 53.6


User provided reference genes

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