Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 0.0e+00 1341.6 674 100.0
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 9.8e-305 1049.7 687 81.7
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 1.8e-202 709.9 600 66.0
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 1.3e-192 677.2 685 56.1
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 1.9e-183 646.7 688 54.7
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 1.4e-181 640.6 687 53.1
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 3.1e-181 639.4 685 53.7
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 3.9e-176 622.5 687 53.3
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 5.1e-176 622.1 706 52.0
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 5.6e-175 618.6 687 51.8
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 3.6e-174 615.9 689 52.0
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 3.4e-172 609.4 683 51.4
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 2.4e-170 603.2 684 51.9
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.1e-169 600.1 687 52.3
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 3.9e-168 595.9 691 51.8
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 8.7e-168 594.7 690 52.0
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 1.1e-167 594.3 689 51.2
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 3.3e-167 592.8 687 49.1
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 2.8e-166 589.7 681 51.7
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 6.2e-166 588.6 669 52.2
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 1.8e-165 587.0 688 51.2
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 3.4e-164 582.8 650 52.2
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 4.4e-164 582.4 690 51.4
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 2.9e-163 579.7 683 50.2
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 4.9e-163 578.9 684 50.7
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 2.4e-162 576.6 687 49.9
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 3.2e-162 576.2 687 49.9
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 5.4e-162 575.5 687 48.8
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 6.6e-160 568.5 676 49.6
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 1.9e-159 567.0 691 50.1
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 3.3e-159 566.2 693 50.8
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 1.5e-156 557.4 698 49.0
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 2.9e-155 553.1 687 49.3
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 4.6e-153 545.8 686 48.3
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 9.9e-148 528.1 696 45.4
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 2.2e-147 526.9 688 47.2
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 1.4e-146 524.2 706 46.6
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 6.7e-144 515.4 670 46.6
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 8.7e-144 515.0 673 47.7
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.5e-143 514.2 701 44.4
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 1.5e-143 514.2 694 47.6
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 3.7e-142 509.6 559 54.9
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 1.1e-141 508.1 709 44.4
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 6.9e-141 505.4 704 44.2
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 6.9e-141 505.4 756 43.0
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 3.4e-140 503.1 718 42.9
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 4.5e-140 502.7 704 44.3
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 2.9e-139 500.0 685 46.1
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 1.4e-138 497.7 685 46.0
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 1.4e-138 497.7 685 46.0
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 5.5e-138 495.7 707 43.3
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 2.1e-137 493.8 702 44.6
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 4.6e-137 492.7 713 44.6
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 6.0e-137 492.3 707 43.8
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.5e-135 487.6 707 42.9
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 1.5e-135 487.6 707 43.4
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 1.3e-134 484.6 704 42.5
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 5.3e-133 479.2 701 42.9
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 9.0e-133 478.4 687 45.6
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 1.5e-132 477.6 718 42.3
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 7.7e-132 475.3 704 41.8
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 1.7e-131 474.2 690 44.2
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 2.2e-131 473.8 688 45.1
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 6.5e-131 472.2 702 42.9
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 1.4e-130 471.1 707 42.6
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 3.2e-130 469.9 689 44.1
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 4.2e-130 469.5 703 43.1
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 1.6e-129 467.6 689 43.3
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 6.1e-129 465.7 690 44.9
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 1.0e-128 464.9 691 44.9
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 3.8e-123 446.4 689 40.3
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 4.2e-122 443.0 704 41.1
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 8.5e-115 418.7 704 38.9
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 2.6e-111 407.1 433 56.1
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 3.6e-105 386.7 435 51.7
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 2.7e-100 370.5 561 44.4
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 7.7e-100 369.0 564 41.0
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 4.7e-97 359.8 561 43.5
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 1.8e-96 357.8 695 36.3
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 6.3e-94 349.4 733 35.5
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 8.3e-94 349.0 433 48.3
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 4.1e-93 346.7 325 58.8
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 1.8e-88 331.3 325 56.6
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 4.1e-85 320.1 323 55.7
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.6e-84 318.2 450 44.4
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 8.9e-80 302.4 284 57.7
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 6.4e-78 296.2 331 51.1
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 3.5e-76 290.4 284 57.0
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 3.3e-66 257.3 225 63.1
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 5.6e-58 229.9 282 50.0
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 4.2e-53 213.8 225 52.0
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 4.3e-50 203.8 326 39.9
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 2.1e-49 201.4 310 41.9
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 1.9e-42 178.3 295 42.7
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 5.6e-42 176.8 615 26.8
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 4.5e-39 167.2 171 58.5
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 2.4e-37 161.4 266 38.7
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 7.9e-36 156.4 387 30.2
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 1.6e-33 148.7 307 37.1
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 6.2e-33 146.7 685 25.5
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 3.2e-29 134.4 155 48.4
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 1.2e-28 132.5 156 49.4
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 6.2e-25 120.2 151 47.7
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 5.3e-24 117.1 162 40.7
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 5.3e-24 117.1 150 45.3
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.0e-22 112.8 120 50.0
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.3e-22 112.5 123 49.6
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 5.5e-21 107.1 153 43.1
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 4.6e-20 104.0 131 41.2
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 1.3e-19 102.4 123 49.6
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 2.5e-18 98.2 128 40.6
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 3.3e-18 97.8 121 48.8
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 4.3e-18 97.4 197 36.0
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 6.3e-17 93.6 199 32.7
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.1e-16 92.8 101 47.5
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 1.1e-16 92.8 290 25.9
SHI26848 Sapria himalayana HOM05D006061 ORTHO05D007450 7.7e-15 86.7 81 58.0
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 3.8e-14 84.3 192 34.4
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 3.9e-11 74.3 114 41.2
RcHm_v2.0_Chr3g0485191 Rosa chinensis HOM05D006061 ORTHO05D007450 8.2e-09 66.6 66 48.5
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 1.8e-08 65.5 90 45.6
RcHm_v2.0_Chr6g0254781 Rosa chinensis HOM05D006061 ORTHO05D007450 4.1e-08 64.3 65 47.7
Actinidia38835 Actinidia chinensis HOM05D006061 ORTHO05D007450 1.3e-06 59.3 66 48.5


User provided reference genes

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