Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 2.6e-80 302.0 151 100.0
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.0e-68 263.5 222 66.7
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 2.7e-61 238.8 222 59.0
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 2.3e-60 235.7 223 59.6
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 9.6e-59 230.3 225 58.7
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.4e-57 226.5 221 56.6
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 1.8e-57 226.1 222 57.7
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 2.4e-57 225.7 225 58.7
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.5e-56 223.0 220 55.5
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.0e-56 222.6 224 57.1
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.3e-55 219.9 223 56.5
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 4.9e-55 218.0 225 56.0
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 8.4e-55 217.2 211 59.2
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.4e-54 216.5 212 58.0
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 7.1e-54 214.2 223 54.3
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 2.7e-53 212.2 222 52.7
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.9e-53 210.7 224 55.8
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.9e-53 210.7 224 55.8
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.3e-52 209.9 229 53.3
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.9e-52 208.4 223 53.8
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.9e-52 208.4 223 53.8
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.1e-52 208.0 223 53.8
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 6.7e-52 207.6 223 53.4
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.1e-51 206.8 221 52.5
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.9e-51 206.1 223 52.9
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.9e-51 206.1 224 54.5
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 2.5e-51 205.7 223 53.4
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 4.3e-51 204.9 223 52.5
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 7.4e-51 204.1 224 54.0
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 9.6e-51 203.8 230 50.9
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 4.8e-50 201.4 224 50.4
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 4.8e-50 201.4 249 49.8
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 8.1e-50 200.7 224 50.0
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 1.8e-49 199.5 223 50.2
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.4e-49 199.1 225 50.7
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.4e-49 199.1 217 50.2
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 2.0e-48 196.1 119 84.0
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.0e-47 193.7 218 50.5
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 3.8e-47 191.8 115 80.0
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.8e-47 191.8 222 50.5
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 8.4e-47 190.7 222 50.5
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.4e-46 189.9 222 50.5
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 3.2e-46 188.7 226 46.5
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 3.2e-46 188.7 222 49.1
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 4.2e-46 188.3 226 47.3
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 7.1e-46 187.6 220 47.7
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 9.3e-46 187.2 223 49.3
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 9.3e-46 187.2 211 51.2
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.2e-45 186.8 228 48.7
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 3.5e-45 185.3 219 47.9
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 4.6e-45 184.9 216 46.8
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 6.0e-45 184.5 224 49.1
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 7.9e-45 184.1 217 50.2
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 7.9e-45 184.1 225 45.8
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.0e-44 183.7 224 45.5
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.0e-44 183.7 231 46.3
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.3e-44 183.3 226 45.1
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.3e-44 183.3 225 45.3
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.8e-44 183.0 224 46.4
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 2.3e-44 182.6 227 47.1
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 3.9e-44 181.8 217 47.0
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 3.9e-44 181.8 223 47.5
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 3.9e-44 181.8 223 47.5
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 3.9e-44 181.8 224 46.4
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 3.9e-44 181.8 117 76.1
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 5.1e-44 181.4 224 46.0
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 5.1e-44 181.4 228 48.2
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 5.1e-44 181.4 113 76.1
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.7e-44 181.0 225 45.8
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.1e-43 180.3 116 76.7
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 1.1e-43 180.3 220 46.8
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.1e-43 180.3 211 50.2
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.9e-43 179.5 213 47.9
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 1.9e-43 179.5 226 46.9
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 4.3e-43 178.3 217 47.0
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.7e-43 177.9 226 44.7
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 7.4e-43 177.6 221 45.7
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 7.4e-43 177.6 221 44.8
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 7.4e-43 177.6 222 45.0
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 7.4e-43 177.6 222 45.0
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 1.3e-42 176.8 223 44.8
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.3e-42 176.8 231 45.0
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.3e-42 176.8 231 45.0
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.6e-42 176.4 224 45.1
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 2.8e-42 175.6 222 46.4
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 4.8e-42 174.9 224 44.6
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 4.8e-42 174.9 227 47.1
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 8.2e-42 174.1 224 45.5
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 8.2e-42 174.1 224 45.5
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 8.2e-42 174.1 219 47.0
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 8.2e-42 174.1 211 45.5
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.8e-41 172.9 220 45.0
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.8e-41 172.9 217 45.6
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.8e-41 172.9 225 47.1
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 3.1e-41 172.2 218 45.0
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 3.1e-41 172.2 223 44.4
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 4.1e-41 171.8 224 43.8
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 5.3e-41 171.4 219 43.4
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 6.9e-41 171.0 111 75.7
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 5.9e-40 167.9 228 42.5
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 7.6e-40 167.5 116 72.4
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.9e-39 165.6 215 42.8
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 4.2e-38 161.8 220 44.5
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 4.2e-38 161.8 224 42.9
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 7.2e-38 161.0 221 43.0
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 9.3e-38 160.6 118 69.5
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 9.3e-38 160.6 221 44.3
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 2.1e-37 159.5 221 40.3
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.7e-37 159.1 224 43.3
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 3.6e-37 158.7 223 40.8
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 4.6e-37 158.3 222 41.9
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 6.1e-37 157.9 218 42.2
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.0e-36 157.1 129 63.6
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 1.0e-36 157.1 227 41.0
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.0e-36 157.1 218 43.6
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.8e-36 156.4 215 42.3
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 1.8e-36 156.4 215 42.3
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 3.0e-36 155.6 221 42.1
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.3e-35 152.1 224 42.4
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 3.3e-35 152.1 217 41.9
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 4.3e-35 151.8 220 39.5
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 4.3e-35 151.8 221 41.2
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 2.2e-34 149.4 218 39.9
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 2.8e-34 149.1 221 41.2
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 4.8e-34 148.3 111 66.7
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.2e-32 143.7 308 32.5
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.7e-31 139.8 86 76.7
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 1.4e-30 136.7 218 36.2
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 3.2e-30 135.6 117 65.0
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 5.5e-30 134.8 114 59.6
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 9.4e-30 134.0 111 64.0
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 9.4e-30 134.0 219 35.2
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 9.4e-30 134.0 218 36.7
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.8e-28 129.8 221 39.4
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.0e-28 129.0 218 34.4
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 9.7e-27 124.0 173 43.4
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 8.8e-20 100.9 152 40.1
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 9.7e-19 97.4 151 39.1
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 6.3e-18 94.7 151 38.4
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 2.4e-17 92.8 152 36.8
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 1.7e-15 86.7 57 73.7
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 2.3e-12 76.3 45 82.2
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 2.6e-11 72.8 49 71.4
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 4.4e-11 72.0 39 84.6
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.5e-11 71.2 77 48.1
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 1.1e-09 67.4 39 76.9
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 4.5e-08 62.0 90 36.7
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 5.9e-08 61.6 41 73.2
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 7.7e-08 61.2 39 69.2
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 7.7e-08 61.2 39 69.2
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 9.4e-06 54.3 28 82.1


User provided reference genes

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