Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20112 Corylus avellana HOM05D000778 ORTHO05D000601 3.7e-250 867.8 470 100.0
Cfa020080 Carpinus fangiana HOM05D000778 ORTHO05D000601 2.6e-203 712.2 513 81.7
QL07p026771 Quercus lobata HOM05D000778 ORTHO05D000601 2.0e-123 446.8 538 56.3
CiPaw.10G019900 Carya illinoinensis HOM05D000778 ORTHO05D000601 2.8e-112 409.8 524 53.8
RcHm_v2.0_Chr3g0477191 Rosa chinensis HOM05D000778 ORTHO05D000601 8.1e-80 302.0 524 43.7
MD12G1044500 Malus domestica HOM05D000778 ORTHO05D000601 3.1e-79 300.1 502 46.0
MD14G1043400 Malus domestica HOM05D000778 ORTHO05D000601 2.0e-78 297.4 502 45.8
Prupe.7G090700 Prunus persica HOM05D000778 ORTHO05D000601 7.6e-78 295.4 498 45.2
CiPaw.09G023300 Carya illinoinensis HOM05D000778 ORTHO05D000601 4.9e-77 292.7 399 54.1
FvH4_6g20850 Fragaria vesca HOM05D000778 ORTHO05D000601 2.1e-75 287.3 501 45.5
FAN14G3360 Fragaria x ananassa HOM05D000778 ORTHO05D000601 2.1e-75 287.3 501 45.5
Dinv11888 Davidia involucrata HOM05D000778 ORTHO05D000601 1.1e-71 275.0 463 46.4
FAN05G2927 Fragaria x ananassa HOM05D000778 ORTHO05D000601 1.8e-71 274.2 508 44.5
FAN05G1121 Fragaria x ananassa HOM05D000778 ORTHO05D000601 9.0e-71 271.9 501 43.9
FAN09G3334 Fragaria x ananassa HOM05D000778 ORTHO05D000601 9.9e-70 268.5 511 44.0
Ciclev10012108m.g Citrus clementina HOM05D000778 ORTHO05D000601 3.8e-69 266.5 501 41.9
FAN02G0507 Fragaria x ananassa HOM05D000778 ORTHO05D000601 9.3e-68 261.9 502 43.2
Duzib128G1870 Durio zibethinus HOM05D000778 ORTHO05D000601 1.7e-66 257.7 525 40.0
TAR623G1775 Trochodendron aralioides HOM05D000778 ORTHO05D000601 1.9e-65 254.2 539 40.6
CSS0044259 Camellia sinensis var. sinensis HOM05D000778 ORTHO05D000601 5.6e-65 252.7 508 42.1
TWI53G1056 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 4.0e-63 246.5 525 38.1
Cpa.g.sc222.23 Carica papaya HOM05D000778 ORTHO05D000601 1.5e-62 244.6 535 40.2
TWI74G0228 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 7.9e-59 232.3 522 37.7
Atru.chr8.1297 Acer truncatum HOM05D000778 ORTHO05D000601 3.9e-58 229.9 505 38.8
Thecc.05G108900 Theobroma cacao HOM05D000778 ORTHO05D000601 6.7e-58 229.2 525 38.1
Duzib093G1343 Durio zibethinus HOM05D000778 ORTHO05D000601 4.8e-56 223.0 522 37.4
Manes.09G042700 Manihot esculenta HOM05D000778 ORTHO05D000601 8.1e-56 222.2 532 37.6
Hma1.2p1_0969F.1_g242590 Hydrangea macrophylla HOM05D000778 ORTHO05D000601 3.1e-55 220.3 503 41.7
CANSAT64G0079 Cannabis sativa HOM05D000778 ORTHO05D000601 4.9e-53 213.0 513 39.0
Potri.016G066600 Populus trichocarpa HOM05D000778 ORTHO05D000601 6.5e-53 212.6 547 36.7
Gohir.A01G199900 Gossypium hirsutum HOM05D000778 ORTHO05D000601 4.2e-52 209.9 524 36.3
Rhsim03G0062900 Rhododendron simsii HOM05D000778 ORTHO05D000601 4.2e-52 209.9 505 41.2
vmacro07492 Vaccinium macrocarpon HOM05D000778 ORTHO05D000601 2.1e-51 207.6 506 39.1
Actinidia37771 Actinidia chinensis HOM05D000778 ORTHO05D000601 3.9e-50 203.4 529 35.9
Manes.08G036400 Manihot esculenta HOM05D000778 ORTHO05D000601 8.7e-50 202.2 536 37.1
Potri.006G200400 Populus trichocarpa HOM05D000778 ORTHO05D000601 6.2e-48 196.1 539 35.3
Actinidia07950 Actinidia chinensis HOM05D000778 ORTHO05D000601 4.5e-46 189.9 450 39.3
Glyma.10G084200 Glycine max HOM05D000778 ORTHO05D000601 1.3e-45 188.3 487 40.0
Lalb_Chr25g0287891 Lupinus albus HOM05D000778 ORTHO05D000601 1.3e-45 188.3 497 37.4
Sabra06G0154300 Salix brachista HOM05D000778 ORTHO05D000601 6.5e-45 186.0 596 33.9
Glyma.19G201500 Glycine max HOM05D000778 ORTHO05D000601 5.5e-44 183.0 516 35.3
Sed0026206 Sechium edule HOM05D000778 ORTHO05D000601 7.1e-44 182.6 498 34.9
Oeu044681.1 Olea europaea HOM05D000778 ORTHO05D000601 4.6e-43 179.9 490 37.3
COL.COLO4_29512 Corchorus olitorius HOM05D000778 ORTHO05D000601 7.9e-43 179.1 492 35.8
VMungo0720G0778 Vigna mungo HOM05D000778 ORTHO05D000601 7.9e-43 179.1 485 36.1
ClCG10G018060 Citrullus lanatus HOM05D000778 ORTHO05D000601 1.0e-42 178.7 487 34.1
Glyma.02G192600 Glycine max HOM05D000778 ORTHO05D000601 2.3e-42 177.6 480 38.5
Sabra16G0068000 Salix brachista HOM05D000778 ORTHO05D000601 2.3e-42 177.6 489 36.6
Phvul.007G266000 Phaseolus vulgaris HOM05D000778 ORTHO05D000601 1.5e-41 174.9 486 37.4
Lj5g0005651 Lotus japonicus HOM05D000778 ORTHO05D000601 5.7e-41 172.9 411 41.8
PGSC0003DMG400021339 Solanum tuberosum HOM05D000778 ORTHO05D000601 7.7e-38 162.5 530 34.7
Ca_11666_v3 Cicer arietinum L. HOM05D000778 ORTHO05D000601 1.0e-37 162.2 408 37.3
Gohir.D01G189900 Gossypium hirsutum HOM05D000778 ORTHO05D000601 1.7e-37 161.4 520 33.3
PGR004G2624 Punica granatum HOM05D000778 ORTHO05D000601 3.8e-37 160.2 525 35.4
TPR.G34436 Trifolium pratense HOM05D000778 ORTHO05D000601 1.1e-36 158.7 490 34.7
Medtr1g055085 Medicago truncatula HOM05D000778 ORTHO05D000601 1.9e-36 157.9 494 35.0
Aqoxy1G00588 Aquilegia oxysepala HOM05D000778 ORTHO05D000601 1.2e-35 155.2 438 34.9
Sopen01g002820 Solanum pennellii HOM05D000778 ORTHO05D000601 1.2e-35 155.2 496 34.1
MBI05_g28095_MAGBIO Magnolia biondii HOM05D000778 ORTHO05D000601 1.6e-35 154.8 403 37.5
Oeu058124.1 Olea europaea HOM05D000778 ORTHO05D000601 1.6e-35 154.8 516 34.3
MELO3C009566.2 Cucumis melo HOM05D000778 ORTHO05D000601 2.1e-35 154.5 500 33.0
Sed0001287 Sechium edule HOM05D000778 ORTHO05D000601 2.1e-35 154.5 509 33.4
CsaV3_3G038240 Cucumis sativus L. HOM05D000778 ORTHO05D000601 7.9e-35 152.5 497 32.8
Gorai.002G233700 Gossypium raimondii HOM05D000778 ORTHO05D000601 1.4e-34 151.8 372 36.8
Solyc01g006830.3 Solanum lycopersicum HOM05D000778 ORTHO05D000601 1.8e-34 151.4 498 33.3
Medtr7g106750 Medicago truncatula HOM05D000778 ORTHO05D000601 2.3e-34 151.0 495 34.3
MSTRG.5916 Avicennia marina HOM05D000778 ORTHO05D000601 3.9e-34 150.2 473 33.8
Nn6g34603 Nelumbo nucifera HOM05D000778 ORTHO05D000601 8.8e-34 149.1 451 35.3
Hund14988 Selenicereus undatus HOM05D000778 ORTHO05D000601 8.8e-34 149.1 534 31.1
Nn2g14388 Nelumbo nucifera HOM05D000778 ORTHO05D000601 2.0e-33 147.9 509 33.4
Phvul.001G197800 Phaseolus vulgaris HOM05D000778 ORTHO05D000601 3.3e-33 147.1 439 36.7
Duzib106G2033 Durio zibethinus HOM05D000778 ORTHO05D000601 1.7e-32 144.8 495 33.5
Nitab4.5_0000721g0190 Nicotiana tabacum HOM05D000778 ORTHO05D000601 1.7e-32 144.8 441 33.6
Nitab4.5_0010873g0010 Nicotiana tabacum HOM05D000778 ORTHO05D000601 2.8e-32 144.1 468 34.8
arahy.Tifrunner.gnm1.ann1.HKB63Q Arachis hypogaea HOM05D000778 ORTHO05D000601 4.8e-32 143.3 493 33.5
arahy.Tifrunner.gnm1.ann1.MF78WR Arachis hypogaea HOM05D000778 ORTHO05D000601 6.3e-32 142.9 495 33.7
TPR.G21246 Trifolium pratense HOM05D000778 ORTHO05D000601 1.4e-31 141.7 486 34.4
CAN.G911.9 Capsicum annuum HOM05D000778 ORTHO05D000601 9.1e-31 139.0 477 32.5
Lj1g0026823 Lotus japonicus HOM05D000778 ORTHO05D000601 9.1e-31 139.0 508 32.5
SalBow1G6066 Salvia bowleyana HOM05D000778 ORTHO05D000601 1.3e-29 135.2 409 35.5
Glyma.03G204200 Glycine max HOM05D000778 ORTHO05D000601 5.0e-29 133.3 366 36.3
PSO384G4839 Papaver somniferum HOM05D000778 ORTHO05D000601 5.0e-29 133.3 463 32.4
PSO339G2773 Papaver somniferum HOM05D000778 ORTHO05D000601 1.4e-28 131.7 463 32.2
MSTRG.26585 Avicennia marina HOM05D000778 ORTHO05D000601 3.2e-28 130.6 525 30.1
Peaxi162Scf00687g00057 Petunia axillaris HOM05D000778 ORTHO05D000601 7.2e-28 129.4 288 37.5
DCAR_016912 Daucus carota HOM05D000778 ORTHO05D000601 1.2e-27 128.6 437 34.8
Solyc10g081730.2 Solanum lycopersicum HOM05D000778 ORTHO05D000601 2.1e-27 127.9 442 32.1
Nitab4.5_0001918g0080 Nicotiana tabacum HOM05D000778 ORTHO05D000601 2.7e-27 127.5 477 28.9
SGA_v2.0_scaffold392G50679 Striga asiatica HOM05D000778 ORTHO05D000601 2.7e-27 127.5 381 32.8
Sopen10g032240 Solanum pennellii HOM05D000778 ORTHO05D000601 6.1e-27 126.3 442 32.1
THA.LOC104815201 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 1.0e-26 125.6 490 32.2
SGA_v2.0_scaffold41G15773 Striga asiatica HOM05D000778 ORTHO05D000601 1.8e-26 124.8 284 38.7
Peaxi162Scf00203g00812 Petunia axillaris HOM05D000778 ORTHO05D000601 2.3e-26 124.4 497 31.0
CAN.G674.21 Capsicum annuum HOM05D000778 ORTHO05D000601 3.0e-26 124.0 450 30.9
VMungo1383G2391 Vigna mungo HOM05D000778 ORTHO05D000601 3.9e-26 123.6 401 34.7
MSTRG.10417 Avicennia marina HOM05D000778 ORTHO05D000601 8.8e-26 122.5 477 30.8
ATR0697G012 Amborella trichopoda HOM05D000778 ORTHO05D000601 1.1e-25 122.1 441 32.7
Lalb_Chr20g0111241 Lupinus albus HOM05D000778 ORTHO05D000601 2.6e-25 120.9 490 33.3
TAR369G0692 Trochodendron aralioides HOM05D000778 ORTHO05D000601 2.8e-24 117.5 287 37.3
EL10Ac5g11820 Beta vulgaris HOM05D000778 ORTHO05D000601 4.8e-24 116.7 415 31.1
PGSC0003DMG400028228 Solanum tuberosum HOM05D000778 ORTHO05D000601 1.4e-23 115.2 497 29.8
Cc06_g06890 Coffea canephora HOM05D000778 ORTHO05D000601 4.1e-23 113.6 481 30.8
DCAR_013455 Daucus carota HOM05D000778 ORTHO05D000601 5.3e-23 113.2 456 32.5
Nitab4.5_0000220g0130 Nicotiana tabacum HOM05D000778 ORTHO05D000601 9.1e-23 112.5 471 31.8
DCAR_009072 Daucus carota HOM05D000778 ORTHO05D000601 1.5e-22 111.7 515 30.9
Psat6g118600 Pisum sativum HOM05D000778 ORTHO05D000601 5.9e-22 109.8 277 39.0
Migut.L01849 Erythranthe guttata HOM05D000778 ORTHO05D000601 1.3e-21 108.6 390 35.4
Hund10830 Selenicereus undatus HOM05D000778 ORTHO05D000601 2.5e-20 104.4 506 29.8
Migut.J00737 Erythranthe guttata HOM05D000778 ORTHO05D000601 4.2e-20 103.6 503 30.2
CARHR130130 Cardamine hirsuta HOM05D000778 ORTHO05D000601 5.5e-20 103.2 424 33.0
Lj3g0016584 Lotus japonicus HOM05D000778 ORTHO05D000601 7.2e-20 102.8 353 35.1
ECA238G1457 Erigeron canadensis HOM05D000778 ORTHO05D000601 9.4e-20 102.4 428 32.9
Lsat_1_v5_gn_2_101800 Lactuca sativa HOM05D000778 ORTHO05D000601 2.1e-19 101.3 381 33.3
Aa31LG5G21020 Aethionema arabicum HOM05D000778 ORTHO05D000601 2.7e-19 100.9 334 34.7
Eucgr.A02553 Eucalyptus grandis HOM05D000778 ORTHO05D000601 8.0e-19 99.4 444 28.2
Zm00001eb114200 Zea mays HOM05D000778 ORTHO05D000601 8.0e-19 99.4 335 34.0
Sc22g0003130 Simmondsia chinensis HOM05D000778 ORTHO05D000601 1.0e-18 99.0 503 28.8
Actinidia03969 Actinidia chinensis HOM05D000778 ORTHO05D000601 1.4e-18 98.6 315 32.7
DCAR_020683 Daucus carota HOM05D000778 ORTHO05D000601 5.2e-18 96.7 448 30.8
TAR369G0228 Trochodendron aralioides HOM05D000778 ORTHO05D000601 5.2e-18 96.7 219 38.8
Ah.02g116100 Amaranthus hybridus HOM05D000778 ORTHO05D000601 5.7e-17 93.2 527 28.1
Os11g0571900 Oryza sativa ssp. japonica HOM05D000778 ORTHO05D000601 7.4e-17 92.8 367 31.9
BcaB02g09392 Brassica carinata HOM05D000778 ORTHO05D000601 1.7e-16 91.7 347 34.6
THA.LOC104803621 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 1.7e-16 91.7 515 30.1
Psat3g028040 Pisum sativum HOM05D000778 ORTHO05D000601 3.7e-16 90.5 382 32.5
HanXRQChr14g0453281 Helianthus annuus HOM05D000778 ORTHO05D000601 4.8e-16 90.1 353 33.7
unitig_26.g9154 Utricularia gibba HOM05D000778 ORTHO05D000601 6.3e-16 89.7 442 28.1
Carub.0004s1763 Capsella rubella HOM05D000778 ORTHO05D000601 1.1e-15 89.0 379 31.7
AT2G35880 Arabidopsis thaliana HOM05D000778 ORTHO05D000601 3.1e-15 87.4 398 30.7
AUR62030689 Chenopodium quinoa HOM05D065301 ORTHO05D000601 4.1e-15 87.0 504 28.8
Ca_04605_v3 Cicer arietinum L. HOM05D000778 ORTHO05D000601 1.2e-14 85.5 264 33.7
SalBow5G4642 Salvia bowleyana HOM05D000778 ORTHO05D000601 1.6e-14 85.1 237 33.8
BraA05t19934Z Brassica rapa HOM05D000778 ORTHO05D000601 2.6e-14 84.3 334 33.8
unitig_749.g14210 Utricularia gibba HOM05D000778 ORTHO05D000601 2.6e-14 84.3 368 30.7
AUR62036333 Chenopodium quinoa HOM05D065301 ORTHO05D000601 4.5e-14 83.6 406 29.1
A05p09820 Brassica napus HOM05D000778 ORTHO05D000601 1.0e-13 82.4 322 33.2
Thhalv10016634m.g Eutrema salsugineum HOM05D000778 ORTHO05D000601 1.3e-13 82.0 392 31.6
Sp4g18130 Schrenkiella parvula HOM05D000778 ORTHO05D000601 2.2e-13 81.3 337 32.0
AL4G31980 Arabidopsis lyrata HOM05D000778 ORTHO05D000601 2.9e-13 80.9 375 30.1
unitig_22.g5153 Utricularia gibba HOM05D000778 ORTHO05D000601 3.8e-13 80.5 115 50.4
BcaB01g03873 Brassica carinata HOM05D000778 ORTHO05D000601 5.0e-13 80.1 342 34.8
Zm00001eb200130 Zea mays HOM05D000778 ORTHO05D000601 5.0e-13 80.1 410 30.0
Actinidia03861 Actinidia chinensis HOM05D000778 ORTHO05D000601 6.5e-13 79.7 134 41.8
BcaC01g05696 Brassica carinata HOM05D000778 ORTHO05D000601 8.5e-13 79.3 325 34.5
BcaC02g11700 Brassica carinata HOM05D000778 ORTHO05D000601 1.1e-12 79.0 334 32.0
C04p12180 Brassica napus HOM05D000778 ORTHO05D000601 1.1e-12 79.0 334 32.0
C03p23090 Brassica napus HOM05D000778 ORTHO05D000601 1.9e-12 78.2 325 34.2
BolC3t14711H Brassica oleracea HOM05D000778 ORTHO05D000601 3.2e-12 77.4 325 34.2
BcaB06g28887 Brassica carinata HOM05D000778 ORTHO05D000601 4.2e-12 77.0 103 56.3
CDE04G1512 Ceratophyllum demersum HOM05D000778 ORTHO05D000601 1.6e-11 75.1 416 28.1
Zm00001eb333920 Zea mays HOM05D000778 ORTHO05D000601 6.1e-11 73.2 194 38.1
BraA03t11232Z Brassica rapa HOM05D000778 ORTHO05D000601 1.0e-10 72.4 395 32.4
ECA248G0938 Erigeron canadensis HOM05D000778 ORTHO05D000601 1.0e-10 72.4 395 29.9
PSO339G5199 Papaver somniferum HOM05D000778 ORTHO05D000601 5.2e-10 70.1 470 28.5
BolC4t22862H Brassica oleracea HOM05D000778 ORTHO05D000601 8.8e-10 69.3 336 31.5
CDE07G0965 Ceratophyllum demersum HOM05D000778 ORTHO05D000601 1.5e-09 68.6 356 28.7
A03p19800 Brassica napus HOM05D000778 ORTHO05D000601 4.4e-09 67.0 181 38.7
HPP92_011042 Vanilla planifolia HOM05D000778 ORTHO05D000601 9.8e-09 65.9 433 27.5
ATR1120G030 Amborella trichopoda HOM05D000778 ORTHO05D000601 1.7e-08 65.1 438 26.7
HanXRQChr02g0052901 Helianthus annuus HOM05D000778 ORTHO05D000601 1.7e-08 65.1 240 32.1
Dinv39727 Davidia involucrata HOM05D001608 ORTHO05D002070 2.2e-08 64.7 116 42.2
Manes.13G013300 Manihot esculenta HOM05D000960 ORTHO05D000683 6.3e-08 63.2 235 34.0
Lsat_1_v5_gn_1_58580 Lactuca sativa HOM05D000778 ORTHO05D000601 8.3e-08 62.8 367 28.6
HanXRQChr13g0398691 Helianthus annuus HOM05D000778 ORTHO05D000601 1.4e-07 62.0 161 36.6
arahy.Tifrunner.gnm1.ann1.XC2T0Q Arachis hypogaea HOM05D000778 ORTHO05D000601 1.8e-07 61.6 497 27.0
CsaV3_3G046420 Cucumis sativus L. HOM05D000778 ORTHO05D000601 2.4e-07 61.2 197 35.5
Manes.12G017400 Manihot esculenta HOM05D000960 ORTHO05D000683 2.4e-07 61.2 79 54.4
PSO384G2510 Papaver somniferum HOM05D000778 ORTHO05D000601 4.1e-07 60.5 339 30.4
HanXRQChr07g0196611 Helianthus annuus HOM05D000778 ORTHO05D000601 5.4e-07 60.1 417 28.8
CiPaw.08G011300 Carya illinoinensis HOM05D000778 ORTHO05D000601 9.1e-07 59.3 154 36.4
Lj8C706T3 Lonicera japonica HOM05D000778 ORTHO05D000601 9.1e-07 59.3 248 30.6
QL02p021758 Quercus lobata HOM05D000778 ORTHO05D000601 1.2e-06 58.9 305 28.9
Duzib268G0788 Durio zibethinus HOM05D000960 ORTHO05D000683 2.0e-06 58.2 113 38.9
Sc23g0006730 Simmondsia chinensis HOM05D000778 ORTHO05D000601 2.0e-06 58.2 185 35.1
Dinv32116 Davidia involucrata HOM05D015976 ORTHO05D019085 2.7e-06 57.8 79 48.1
Lsat_1_v5_gn_6_34641 Lactuca sativa HOM05D000778 ORTHO05D000601 2.7e-06 57.8 403 27.5
Cc08_g00650 Coffea canephora HOM05D000778 ORTHO05D000601 5.9e-06 56.6 369 29.5
MELO3C003697.2 Cucumis melo HOM05D000778 ORTHO05D000601 7.7e-06 56.2 356 29.2


User provided reference genes

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