Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16618 Corylus avellana HOM05D000840 ORTHO05D000670 9.5e-47 189.9 100 100.0
Cfa001926 Carpinus fangiana HOM05D000840 ORTHO05D000670 7.3e-39 163.7 100 90.0
Cfa001922 Carpinus fangiana HOM05D000840 ORTHO05D000670 4.2e-34 147.9 82 93.9
Haze_16616 Corylus avellana HOM05D000840 ORTHO05D000670 8.1e-30 133.7 81 86.4
Cfa001923 Carpinus fangiana HOM05D000840 ORTHO05D000670 2.7e-25 118.6 81 81.5
Haze_16613 Corylus avellana HOM05D000840 ORTHO05D000670 3.2e-18 95.1 79 67.1
Cfa001928 Carpinus fangiana HOM05D000840 ORTHO05D000670 9.3e-18 93.6 79 65.8
Gorai.009G126200 Gossypium raimondii HOM05D000840 ORTHO05D000670 6.0e-17 90.9 94 55.3
Gohir.A05G121700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 3.0e-16 88.6 94 54.3
Gohir.D05G122700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 5.1e-16 87.8 94 54.3
Thecc.06G034100 Theobroma cacao HOM05D000840 ORTHO05D000670 8.7e-16 87.0 94 52.1
Gohir.A10G072300 Gossypium hirsutum HOM05D000840 ORTHO05D000670 1.1e-15 86.7 80 58.8
Gohir.D10G078800 Gossypium hirsutum HOM05D000840 ORTHO05D000670 1.1e-15 86.7 80 58.8
CiPaw.02G159300 Carya illinoinensis HOM05D000840 ORTHO05D000670 1.5e-15 86.3 79 59.5
Thecc.06G034400 Theobroma cacao HOM05D000840 ORTHO05D000670 1.9e-15 85.9 94 51.1
CiPaw.02G159400 Carya illinoinensis HOM05D000840 ORTHO05D000670 2.5e-15 85.5 79 59.5
MD11G1036600 Malus domestica HOM05D000840 ORTHO05D000670 2.5e-15 85.5 80 57.5
Gorai.011G085600 Gossypium raimondii HOM05D000840 ORTHO05D000670 5.6e-15 84.3 80 57.5
FvH4_3g42370 Fragaria vesca HOM05D000840 ORTHO05D000670 9.6e-15 83.6 81 56.8
FAN11G2882 Fragaria x ananassa HOM05D000840 ORTHO05D000670 9.6e-15 83.6 81 56.8
FAN28G2945 Fragaria x ananassa HOM05D000840 ORTHO05D000670 9.6e-15 83.6 81 56.8
Atru.chr4.1644_Atru.chr4.1657 Acer truncatum HOM05D000840 ORTHO05D000670 1.3e-14 83.2 75 60.0
RcHm_v2.0_Chr5g0075871 Rosa chinensis HOM05D000840 ORTHO05D000670 1.6e-14 82.8 81 56.8
Ciclev10024717m.g Citrus clementina HOM05D000840 ORTHO05D000670 3.7e-14 81.6 74 60.8
COL.COLO4_11847 Corchorus olitorius HOM05D000840 ORTHO05D000670 8.1e-14 80.5 75 57.3
MD03G1032700 Malus domestica HOM05D000840 ORTHO05D000670 8.1e-14 80.5 80 55.0
Duzib235G0104 Durio zibethinus HOM05D000840 ORTHO05D000670 1.8e-13 79.3 79 53.2
FAN25G1451 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.8e-13 79.3 110 46.4
GSVIVG01027201001 Vitis vinifera HOM05D000840 ORTHO05D000670 4.0e-13 78.2 69 62.3
Manes.11G061900 Manihot esculenta HOM05D000840 ORTHO05D000670 6.9e-13 77.4 71 60.6
QL05p033046 Quercus lobata HOM05D000840 ORTHO05D000670 6.9e-13 77.4 78 56.4
FAN16G1995 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.2e-12 76.6 104 48.1
Dinv31533 Davidia involucrata HOM05D000840 ORTHO05D000670 1.5e-12 76.3 103 49.5
Lalb_Chr24g0395381 Lupinus albus HOM05D000840 ORTHO05D000670 1.5e-12 76.3 73 56.2
MD03G1033400 Malus domestica HOM05D000840 ORTHO05D000670 3.4e-12 75.1 80 53.8
Potri.001G204900 Populus trichocarpa HOM05D000840 ORTHO05D000670 3.4e-12 75.1 73 56.2
Medtr2g104400 Medicago truncatula HOM05D000840 ORTHO05D000670 4.5e-12 74.7 81 51.9
MD03G1033800 Malus domestica HOM05D000840 ORTHO05D000670 5.8e-12 74.3 80 53.8
Gohir.A05G121650 Gossypium hirsutum HOM05D000840 ORTHO05D000670 7.6e-12 73.9 78 52.6
TPR.G37212 Trifolium pratense HOM05D000840 ORTHO05D000670 1.3e-11 73.2 75 54.7
Lalb_Chr25g0279141 Lupinus albus HOM05D000840 ORTHO05D000670 1.7e-11 72.8 73 53.4
Sabra03G0016100 Salix brachista HOM05D000840 ORTHO05D000670 1.7e-11 72.8 105 42.9
CANSAT56G3623 Cannabis sativa HOM05D000840 ORTHO05D000670 2.9e-11 72.0 83 51.8
Sabra03G0015900 Salix brachista HOM05D000840 ORTHO05D000670 2.9e-11 72.0 72 52.8
Glyma.07G027800 Glycine max HOM05D000840 ORTHO05D000670 4.9e-11 71.2 112 45.5
MD03G1034600 Malus domestica HOM05D000840 ORTHO05D000670 4.9e-11 71.2 74 55.4
arahy.Tifrunner.gnm1.ann1.40JDZM Arachis hypogaea HOM05D000840 ORTHO05D000670 6.5e-11 70.9 75 52.0
MD03G1033000 Malus domestica HOM05D000840 ORTHO05D000670 6.5e-11 70.9 80 50.0
Actinidia01522 Actinidia chinensis HOM05D000840 ORTHO05D000670 8.4e-11 70.5 80 50.0
Manes.04G107400 Manihot esculenta HOM05D000840 ORTHO05D000670 1.1e-10 70.1 70 55.7
TAR633G2034 Trochodendron aralioides HOM05D000840 ORTHO05D000670 1.1e-10 70.1 92 45.7
Cpa.g.sc14.207 Carica papaya HOM05D000840 ORTHO05D000670 1.4e-10 69.7 79 50.6
Eucgr.E03533 Eucalyptus grandis HOM05D000840 ORTHO05D000670 1.4e-10 69.7 88 47.7
arahy.Tifrunner.gnm1.ann1.PEC4AR Arachis hypogaea HOM05D000840 ORTHO05D000670 1.9e-10 69.3 75 52.0
Lj3g0027916 Lotus japonicus HOM05D000840 ORTHO05D000670 2.5e-10 68.9 80 51.2
Rhsim01G0123000 Rhododendron simsii HOM05D000840 ORTHO05D000670 2.5e-10 68.9 77 53.2
TPR.G19143 Trifolium pratense HOM05D000840 ORTHO05D000670 2.5e-10 68.9 81 49.4
Duzib235G1450 Durio zibethinus HOM05D000840 ORTHO05D000670 3.2e-10 68.6 79 49.4
Lalb_Chr04g0262271 Lupinus albus HOM05D000840 ORTHO05D000670 3.2e-10 68.6 73 49.3
Rhsim01G0122800 Rhododendron simsii HOM05D000840 ORTHO05D000670 3.2e-10 68.6 77 53.2
Phvul.005G180200 Phaseolus vulgaris HOM05D000840 ORTHO05D000670 4.2e-10 68.2 73 53.4
Cpa.g.sc10.131 Carica papaya HOM05D000840 ORTHO05D000670 5.5e-10 67.8 73 53.4
Eucgr.J00090 Eucalyptus grandis HOM05D000840 ORTHO05D000670 5.5e-10 67.8 79 50.6
Oeu012484.1 Olea europaea HOM05D000840 ORTHO05D000670 5.5e-10 67.8 83 45.8
DCAR_003830 Daucus carota HOM05D000840 ORTHO05D000670 7.1e-10 67.4 87 47.1
Lj3g0024586 Lotus japonicus HOM05D000840 ORTHO05D000670 7.1e-10 67.4 94 46.8
RcHm_v2.0_Chr5g0075841 Rosa chinensis HOM05D000840 ORTHO05D000670 7.1e-10 67.4 81 49.4
CiPaw.01G251200 Carya illinoinensis HOM05D000840 ORTHO05D000670 9.3e-10 67.0 51 68.6
VMungo0331G0091 Vigna mungo HOM05D000840 ORTHO05D000670 9.3e-10 67.0 74 51.4
VMungo1080G0802 Vigna mungo HOM05D000840 ORTHO05D000670 9.3e-10 67.0 73 52.1
Phvul.010G157900 Phaseolus vulgaris HOM05D000840 ORTHO05D000670 1.6e-09 66.2 97 49.5
Potri.003G013000 Populus trichocarpa HOM05D000840 ORTHO05D000670 1.6e-09 66.2 84 44.0
Ca_20456_v3 Cicer arietinum L. HOM05D000840 ORTHO05D000670 2.1e-09 65.9 96 47.9
Glyma.13G367700 Glycine max HOM05D000840 ORTHO05D000670 2.1e-09 65.9 73 53.4
Potri.003G028401 Populus trichocarpa HOM05D000840 ORTHO05D000670 2.1e-09 65.9 75 46.7
Actinidia01692 Actinidia chinensis HOM05D000840 ORTHO05D000670 2.7e-09 65.5 80 47.5
Rhsim01G0071500 Rhododendron simsii HOM05D000840 ORTHO05D000670 2.7e-09 65.5 77 51.9
Rhsim01G0072100 Rhododendron simsii HOM05D000840 ORTHO05D000670 2.7e-09 65.5 77 51.9
Dinv31992 Davidia involucrata HOM05D000840 ORTHO05D000670 3.5e-09 65.1 83 49.4
Glyma.15G005500 Glycine max HOM05D000840 ORTHO05D000670 3.5e-09 65.1 73 52.1
Oeu027053.1 Olea europaea HOM05D000840 ORTHO05D000670 3.5e-09 65.1 82 45.1
Psat5g304200 Pisum sativum HOM05D000840 ORTHO05D000670 3.5e-09 65.1 74 51.4
Potri.003G013300 Populus trichocarpa HOM05D000840 ORTHO05D000670 4.6e-09 64.7 84 44.0
Prupe.6G027900 Prunus persica HOM05D000840 ORTHO05D000670 4.6e-09 64.7 74 51.4
FAN21G2894 Fragaria x ananassa HOM05D000840 ORTHO05D000670 6.0e-09 64.3 98 44.9
Glyma.08G214900 Glycine max HOM05D000840 ORTHO05D000670 6.0e-09 64.3 94 47.9
FAN16G3492 Fragaria x ananassa HOM05D000840 ORTHO05D000670 7.9e-09 63.9 78 51.3
MSTRG.20450 Avicennia marina HOM05D000840 ORTHO05D000670 1.0e-08 63.5 72 48.6
Lalb_Chr01g0012231 Lupinus albus HOM05D000840 ORTHO05D000670 1.0e-08 63.5 73 47.9
Prupe.6G027500 Prunus persica HOM05D000840 ORTHO05D000670 1.0e-08 63.5 43 69.8
Sc14g0004830 Simmondsia chinensis HOM05D000840 ORTHO05D000670 1.0e-08 63.5 76 48.7
Eucgr.A00861 Eucalyptus grandis HOM05D000840 ORTHO05D000670 1.3e-08 63.2 86 44.2
arahy.Tifrunner.gnm1.ann1.E5CV98 Arachis hypogaea HOM05D000840 ORTHO05D000670 1.8e-08 62.8 70 51.4
FvH4_3g42361 Fragaria vesca HOM05D000840 ORTHO05D000670 1.8e-08 62.8 78 51.3
arahy.Tifrunner.gnm1.ann1.8F3D8E Arachis hypogaea HOM05D000840 ORTHO05D000670 2.3e-08 62.4 85 44.7
TWI75G0929 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 3.0e-08 62.0 79 53.2
QL05p033135 Quercus lobata HOM05D000840 ORTHO05D000670 5.1e-08 61.2 78 50.0
TPR.G38700 Trifolium pratense HOM05D000840 ORTHO05D000670 1.1e-07 60.1 75 46.7
TWI12G0605 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 1.1e-07 60.1 111 39.6
Psat7g257920 Pisum sativum HOM05D000840 ORTHO05D000670 1.9e-07 59.3 96 43.8
TWI75G1741 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 1.9e-07 59.3 76 48.7
CSS0003676 Camellia sinensis var. sinensis HOM05D000840 ORTHO05D000670 2.5e-07 58.9 78 47.4
Gohir.D05G122600 Gossypium hirsutum HOM05D000840 ORTHO05D000670 3.3e-07 58.5 68 51.5
Gorai.009G126100 Gossypium raimondii HOM05D000840 ORTHO05D000670 3.3e-07 58.5 68 51.5
Sed0011014 Sechium edule HOM05D000840 ORTHO05D000670 3.3e-07 58.5 75 42.7
unitig_46.g18379 Utricularia gibba HOM05D000840 ORTHO05D000670 5.7e-07 57.8 81 45.7
unitig_48.g30294 Utricularia gibba HOM05D000840 ORTHO05D000670 5.7e-07 57.8 81 45.7
Lj7C492G1 Lonicera japonica HOM05D000840 ORTHO05D000670 7.4e-07 57.4 74 43.2
EL10Ac2g02702 Beta vulgaris HOM05D000840 ORTHO05D000670 1.3e-06 56.6 76 43.4
Medtr4g009740 Medicago truncatula HOM05D000840 ORTHO05D000670 1.3e-06 56.6 72 51.4
Rhsim01G0143500 Rhododendron simsii HOM05D000840 ORTHO05D000670 1.3e-06 56.6 77 46.8
Hund15769 Selenicereus undatus HOM05D000840 ORTHO05D000670 1.6e-06 56.2 87 39.1
AUR62032561 Chenopodium quinoa HOM05D000840 ORTHO05D000670 2.1e-06 55.8 76 46.1
Ca_01040_v3 Cicer arietinum L. HOM05D000840 ORTHO05D000670 2.1e-06 55.8 44 63.6
Migut.B01095 Erythranthe guttata HOM05D000840 ORTHO05D000670 2.1e-06 55.8 65 47.7
Potri.003G012400 Populus trichocarpa HOM05D000840 ORTHO05D000670 2.1e-06 55.8 70 48.6
Ah.10g029760 Amaranthus hybridus HOM05D000840 ORTHO05D000670 2.8e-06 55.5 85 42.4
SGA_v2.0_scaffold172G38982 Striga asiatica HOM05D000840 ORTHO05D000670 2.8e-06 55.5 67 46.3
Medtr2g104430 Medicago truncatula HOM05D000840 ORTHO05D000670 3.7e-06 55.1 59 54.2
ClCG09G013510 Citrullus lanatus HOM05D000840 ORTHO05D000670 4.8e-06 54.7 80 42.5
Gohir.A05G121600 Gossypium hirsutum HOM05D000840 ORTHO05D000670 4.8e-06 54.7 68 47.1
SalBow8G1535 Salvia bowleyana HOM05D000840 ORTHO05D000670 4.8e-06 54.7 47 57.4
AUR62031677 Chenopodium quinoa HOM05D000840 ORTHO05D000670 8.2e-06 53.9 76 46.1


User provided reference genes

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