Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16588 Corylus avellana HOM05D003206 ORTHO05D014283 1.0e-38 162.9 83 100.0
Cfa001939 Carpinus fangiana HOM05D003206 ORTHO05D005207 5.3e-35 150.6 82 92.7
Haze_20327 Corylus avellana HOM05D003206 ORTHO05D005207 9.4e-32 139.8 82 87.8
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 4.7e-31 137.5 82 82.9
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 7.9e-31 136.7 81 84.0
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 7.9e-31 136.7 82 82.9
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.9e-31 136.7 82 82.9
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.9e-31 136.7 82 82.9
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.9e-31 136.7 82 82.9
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.9e-31 136.7 82 82.9
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.0e-30 136.3 82 82.9
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 5.1e-30 134.0 82 81.7
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 8.8e-30 133.3 82 79.3
Cfa021276 Carpinus fangiana HOM05D003206 ORTHO05D014283 1.1e-29 132.9 82 81.7
Haze_16591 Corylus avellana HOM05D003206 ORTHO05D014283 1.1e-29 132.9 83 81.9
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 1.1e-29 132.9 82 81.7
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 1.5e-29 132.5 82 80.5
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 1.5e-29 132.5 81 81.5
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 2.0e-29 132.1 82 81.7
Cfa012491 Carpinus fangiana HOM05D003206 ORTHO05D014283 2.6e-29 131.7 80 81.2
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 2.6e-29 131.7 82 81.7
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 3.3e-29 131.3 82 80.5
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 4.4e-29 131.0 82 80.5
Atru.chr1.2869 Acer truncatum HOM05D003206 ORTHO05D014283 5.7e-29 130.6 82 79.3
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 5.7e-29 130.6 82 76.8
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 7.4e-29 130.2 82 81.7
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 7.4e-29 130.2 82 76.8
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 9.7e-29 129.8 82 80.5
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 9.7e-29 129.8 82 76.8
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 9.7e-29 129.8 82 78.0
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 9.7e-29 129.8 82 76.8
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 9.7e-29 129.8 82 76.8
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 9.7e-29 129.8 82 76.8
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 9.7e-29 129.8 82 79.3
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 9.7e-29 129.8 82 80.5
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 1.3e-28 129.4 82 78.0
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 1.3e-28 129.4 82 76.8
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 1.3e-28 129.4 82 79.3
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 1.3e-28 129.4 82 79.3
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 1.3e-28 129.4 82 78.0
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 1.3e-28 129.4 82 80.5
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 1.7e-28 129.0 82 80.5
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 1.7e-28 129.0 82 79.3
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 2.2e-28 128.6 82 79.3
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 2.2e-28 128.6 82 78.0
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 2.8e-28 128.3 82 79.3
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 2.8e-28 128.3 82 81.7
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 3.7e-28 127.9 82 75.6
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 3.7e-28 127.9 82 75.6
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 3.7e-28 127.9 82 78.0
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 3.7e-28 127.9 82 76.8
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 3.7e-28 127.9 82 79.3
GSVIVG01017394001 Vitis vinifera HOM05D003206 ORTHO05D014283 3.7e-28 127.9 82 79.3
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 3.7e-28 127.9 82 79.3
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 4.8e-28 127.5 82 79.3
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 4.8e-28 127.5 82 76.8
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 4.8e-28 127.5 82 79.3
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 6.3e-28 127.1 82 75.6
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 6.3e-28 127.1 82 74.4
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 6.3e-28 127.1 82 76.8
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 8.2e-28 126.7 82 74.4
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 8.2e-28 126.7 82 78.0
BcaC08g47591 Brassica carinata HOM05D003206 ORTHO05D014283 1.1e-27 126.3 82 75.6
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 1.1e-27 126.3 82 75.6
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 1.1e-27 126.3 82 75.6
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 1.1e-27 126.3 82 75.6
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 1.1e-27 126.3 82 75.6
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 1.1e-27 126.3 82 75.6
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 1.1e-27 126.3 82 75.6
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 1.1e-27 126.3 82 75.6
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 1.1e-27 126.3 82 75.6
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 1.1e-27 126.3 82 75.6
Sc10g0006040 Simmondsia chinensis HOM05D003206 ORTHO05D005207 1.1e-27 126.3 82 76.8
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 1.4e-27 125.9 81 81.5
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 1.8e-27 125.6 82 76.8
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 1.8e-27 125.6 82 76.8
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 1.8e-27 125.6 81 77.8
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 1.8e-27 125.6 82 78.0
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 1.8e-27 125.6 82 78.0
Glyma.08G214200 Glycine max HOM05D003206 ORTHO05D014283 2.4e-27 125.2 82 70.7
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 2.4e-27 125.2 82 74.4
TAR626G0098 Trochodendron aralioides HOM05D003206 ORTHO05D005207 2.4e-27 125.2 81 77.8
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 3.1e-27 124.8 82 74.4
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 3.1e-27 124.8 82 76.8
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 4.1e-27 124.4 82 75.6
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 4.1e-27 124.4 82 78.0
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 4.1e-27 124.4 82 76.8
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 5.3e-27 124.0 82 74.4
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 5.3e-27 124.0 82 78.0
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 5.3e-27 124.0 82 74.4
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 5.3e-27 124.0 82 74.4
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 5.3e-27 124.0 82 73.2
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 7.0e-27 123.6 82 74.4
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 9.1e-27 123.2 82 73.2
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 9.1e-27 123.2 82 74.4
BcaC03g15966 Brassica carinata HOM05D003206 ORTHO05D005207 9.1e-27 123.2 82 74.4
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 9.1e-27 123.2 82 75.6
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 9.1e-27 123.2 82 72.0
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 9.1e-27 123.2 82 74.4
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 1.2e-26 122.9 82 74.4
Manes.11G060045 Manihot esculenta HOM05D003206 ORTHO05D005207 1.6e-26 122.5 82 75.6
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 1.6e-26 122.5 82 74.4
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 2.0e-26 122.1 82 73.2
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 2.0e-26 122.1 82 72.0
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.0e-26 122.1 80 73.8
Oeu004210.1 Olea europaea HOM05D003206 ORTHO05D005207 2.0e-26 122.1 82 72.0
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 2.6e-26 121.7 82 73.2
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 3.5e-26 121.3 82 75.6
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 4.5e-26 120.9 82 69.5
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 5.9e-26 120.6 82 72.0
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 5.9e-26 120.6 82 72.0
CSS0035908 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D014283 1.3e-25 119.4 82 73.2
Hma1.2p1_0017F.1_g011400 Hydrangea macrophylla HOM05D003206 ORTHO05D014283 1.7e-25 119.0 80 77.5
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 8.5e-25 116.7 81 69.1
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 8.5e-25 116.7 82 73.2
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 1.1e-24 116.3 84 72.6
Ciclev10024258m.g Citrus clementina HOM05D003206 ORTHO05D005207 1.9e-24 115.5 82 70.7
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 2.5e-24 115.2 82 67.1
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 3.2e-24 114.8 82 73.2
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 3.2e-24 114.8 82 69.5
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 3.2e-24 114.8 80 70.0
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 4.2e-24 114.4 82 70.7
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 7.2e-24 113.6 82 69.5
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 9.4e-24 113.2 82 69.5
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 9.4e-24 113.2 82 69.5
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 1.2e-23 112.8 82 68.3
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 1.2e-23 112.8 82 65.9
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 1.2e-23 112.8 82 68.3
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 1.6e-23 112.5 83 69.9
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 2.7e-23 111.7 82 67.1
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 3.6e-23 111.3 82 67.1
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 4.7e-23 110.9 82 68.3
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 6.1e-23 110.5 82 70.7
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 8.0e-23 110.2 82 64.6
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 2.3e-22 108.6 82 67.1
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 4.0e-22 107.8 82 69.5
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 5.2e-22 107.5 82 63.4
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 1.5e-21 105.9 80 68.8
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 5.7e-21 104.0 79 63.3
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 9.7e-21 103.2 82 64.6
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 1.3e-20 102.8 80 63.8
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 1.3e-20 102.8 80 63.8
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 1.3e-20 102.8 82 58.5
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 1.1e-19 99.8 80 60.0
PSO478G0299 Papaver somniferum HOM05D003206 ORTHO05D005207 1.4e-19 99.4 81 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 1.8e-19 99.0 81 60.5
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 7.0e-19 97.1 82 58.5
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 9.1e-19 96.7 82 59.8
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 2.0e-18 95.5 80 66.2
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 3.5e-18 94.7 82 57.3
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 1.3e-17 92.8 80 58.8
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.5e-16 89.4 64 70.3
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 3.6e-15 84.7 55 78.2
Manes.02G220960 Manihot esculenta HOM05D003206 ORTHO05D014283 1.8e-14 82.4 59 67.8
Manes.02G220810 Manihot esculenta HOM05D003206 ORTHO05D014283 8.8e-14 80.1 50 80.0
Aqoxy133s001 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 7.5e-13 77.0 65 66.2
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 9.8e-13 76.6 48 75.0
Cre04.g224150 Chlamydomonas reinhardtii HOM05D003206 ORTHO05D005207 1.7e-12 75.9 81 46.9
CBR_g36912 Chara braunii HOM05D003206 ORTHO05D005207 4.5e-10 67.8 108 36.1
CBR_g30419 Chara braunii HOM05D003206 ORTHO05D005207 7.7e-10 67.0 108 36.1
PSO063G0253 Papaver somniferum HOM05D003206 ORTHO05D016781 1.3e-09 66.2 61 55.7
unitig_27.g24952 Utricularia gibba HOM05D003206 ORTHO05D002964 1.9e-08 62.4 41 75.6
Haze_26767 Corylus avellana HOM05D003206 ORTHO05D005207 9.4e-08 60.1 74 43.2
PRCOL_00002221 Prasinoderma coloniale HOM05D003206 ORTHO05D005207 1.6e-07 59.3 74 41.9
MCO09G056 Micromonas commoda HOM05D003206 ORTHO05D005207 2.7e-07 58.5 90 33.3
Manes.11G080700 Manihot esculenta HOM05D003206 ORTHO05D014283 8.0e-07 57.0 30 93.3
arahy.Tifrunner.gnm1.ann1.GS37TA Arachis hypogaea HOM05D003206 ORTHO05D005207 5.2e-06 54.3 38 68.4
Nn2g15151 Nelumbo nucifera HOM05D002170 ORTHO05D005003 8.8e-06 53.5 54 50.0


User provided reference genes

Program Settings