Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 5.8e-250 867.1 431 100.0
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 3.5e-239 831.2 431 95.4
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 2.8e-188 662.1 429 77.6
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 9.4e-184 647.1 431 75.4
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 3.5e-138 495.7 429 61.3
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 4.3e-136 488.8 434 61.1
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 8.1e-135 484.6 435 60.7
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 6.4e-132 474.9 430 59.8
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 3.2e-131 472.6 436 59.6
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 2.7e-130 469.5 431 60.1
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 6.6e-129 464.9 431 59.9
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.9e-128 463.4 431 59.6
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 1.9e-128 463.4 407 60.0
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 7.3e-128 461.5 428 59.6
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.6e-127 460.3 430 57.2
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 2.1e-127 459.9 435 58.9
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 5.2e-126 455.3 427 59.3
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 5.8e-125 451.8 434 58.3
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 2.4e-123 446.4 429 56.6
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.1e-122 443.4 429 56.6
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 1.3e-121 440.7 433 56.4
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 1.3e-121 440.7 431 57.1
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 3.1e-118 429.5 428 57.7
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 1.5e-117 427.2 417 53.7
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 1.4e-115 420.6 404 57.7
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 4.2e-115 419.1 427 55.0
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 3.0e-113 412.9 442 52.5
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 3.9e-113 412.5 430 53.0
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 7.3e-112 408.3 428 55.1
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 8.1e-111 404.8 436 53.9
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 4.5e-109 399.1 444 51.4
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.1e-107 394.4 438 53.7
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 1.3e-103 380.9 454 49.1
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 4.8e-103 379.0 438 52.5
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 6.2e-103 378.6 438 52.3
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 2.4e-102 376.7 481 46.8
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 2.6e-101 373.2 469 47.1
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 7.6e-101 371.7 434 49.1
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 3.8e-100 369.4 469 46.7
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 4.9e-100 369.0 435 48.5
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 6.5e-100 368.6 434 49.3
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 7.9e-98 361.7 432 50.0
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 2.3e-97 360.1 438 48.2
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 3.0e-97 359.8 436 50.2
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 1.1e-96 357.8 472 47.2
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 4.3e-96 355.9 453 47.0
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 4.3e-96 355.9 429 47.6
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 1.2e-93 347.8 443 48.3
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 1.5e-93 347.4 429 47.6
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 2.0e-93 347.1 443 48.3
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.9e-92 343.2 435 48.0
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.9e-92 343.2 435 48.0
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 2.1e-90 337.0 437 46.2
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 2.1e-90 337.0 461 45.8
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 1.1e-88 331.3 435 44.6
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 4.3e-88 329.3 431 49.9
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 2.2e-87 327.0 433 45.3
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 2.8e-87 326.6 446 44.2
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 4.1e-86 322.8 435 45.1
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 7.7e-85 318.5 436 44.7
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 2.9e-84 316.6 427 46.4
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 3.8e-84 316.2 431 44.3
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 9.4e-83 311.6 468 43.8
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 2.1e-82 310.5 384 50.0
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 7.9e-82 308.5 441 44.2
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 3.9e-81 306.2 438 47.7
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.8e-79 300.1 438 47.0
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 4.8e-79 299.3 442 42.1
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 2.4e-78 297.0 484 41.9
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 4.1e-78 296.2 425 43.5
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.5e-77 294.3 438 46.3
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.6e-77 293.5 382 42.7
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 2.6e-77 293.5 430 40.9
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 2.9e-76 290.0 435 43.2
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 8.5e-76 288.5 434 42.4
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 1.9e-75 287.3 458 41.5
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.0e-73 281.6 431 46.6
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 3.0e-73 280.0 482 40.9
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 5.7e-72 275.8 465 41.3
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 2.4e-70 270.4 482 40.2
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 2.6e-69 266.9 439 40.1
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 6.5e-68 262.3 432 41.4
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 7.2e-67 258.8 442 39.4
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 3.6e-66 256.5 437 39.1
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 1.4e-65 254.6 435 39.1
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 5.2e-65 252.7 431 38.3
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.5e-64 251.1 445 39.3
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 7.4e-64 248.8 434 39.2
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 4.8e-63 246.1 448 38.6
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 8.2e-63 245.4 442 37.6
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.4e-62 243.8 388 45.1
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 2.6e-61 240.4 435 39.5
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 3.8e-60 236.5 443 36.1
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 3.8e-60 236.5 443 36.1
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 1.9e-59 234.2 248 52.8
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 5.5e-59 232.6 430 38.4
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 2.7e-58 230.3 451 36.8
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 9.8e-56 221.9 440 35.5
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 1.7e-52 211.1 284 43.7
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 8.5e-52 208.8 434 35.7
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 1.9e-51 207.6 436 36.5
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 1.9e-51 207.6 436 36.5
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 1.9e-51 207.6 436 36.5
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 8.8e-49 198.7 453 34.4
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.7e-44 184.5 442 35.3
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 2.1e-42 177.6 259 40.9
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 2.3e-33 147.5 343 34.7
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 6.8e-33 146.0 458 27.9
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 1.6e-26 124.8 505 25.5
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 6.8e-25 119.4 227 39.2
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.8e-18 97.4 457 28.0
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 3.1e-17 94.0 140 42.1
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 1.6e-13 81.6 257 30.4
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.2e-10 72.0 78 48.7
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 1.1e-06 58.9 104 43.3


User provided reference genes

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