Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 2154.4 1107 100.0
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1836.6 1108 87.8
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1825.8 1116 85.4
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1800.4 1120 84.5
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1707.6 1119 78.8
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1705.6 1115 78.4
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1696.0 1116 78.3
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1693.7 1122 77.8
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1691.0 1116 78.0
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1676.4 1118 77.5
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1669.8 1117 77.3
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1668.3 1116 77.4
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1654.4 1116 75.8
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1654.0 1116 76.9
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1652.5 1116 75.8
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1650.2 1117 76.1
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1647.1 1115 76.4
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1646.7 1116 75.5
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1640.2 1128 75.4
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1622.1 1117 75.8
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1621.3 1119 75.2
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1620.5 1117 75.5
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1611.7 1120 74.2
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1610.9 1117 75.5
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1600.9 1119 73.6
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1598.6 1117 73.1
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1598.2 1136 74.2
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1593.9 1116 74.6
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1589.3 1115 73.5
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1577.8 1115 72.5
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1577.4 1122 73.0
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1576.6 1115 72.6
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1576.2 1115 73.2
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1576.2 1040 76.4
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1576.2 1116 72.5
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1568.1 1117 71.3
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1565.4 1133 71.8
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1564.3 1116 71.9
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1563.9 1128 71.2
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1562.7 1125 72.5
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1561.6 1115 71.6
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1552.7 1121 71.0
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1552.3 1121 72.7
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1552.0 1120 72.1
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1550.0 1119 71.8
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1537.7 1116 71.4
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1537.3 1121 70.5
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1537.3 991 79.4
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1535.8 1113 71.1
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1533.1 1116 71.2
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1529.6 1132 70.8
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1517.3 1124 70.3
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1516.1 1130 69.8
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1509.6 1115 71.0
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1506.5 1190 67.7
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1501.5 1117 70.3
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1497.6 1116 70.3
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1496.1 1124 70.2
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1495.7 1141 68.6
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1495.7 1117 70.1
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1493.4 1125 70.2
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1492.2 1164 68.3
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1478.8 1049 73.1
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1478.8 990 76.5
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1476.8 1206 65.4
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1476.5 992 77.8
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1471.4 1014 74.2
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1448.7 1008 74.2
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1421.8 1132 67.2
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1421.4 1031 70.4
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1419.1 1274 61.2
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1389.0 1068 67.1
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1375.1 1118 64.5
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1373.2 1056 66.6
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1372.1 1021 70.4
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1366.3 911 76.8
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1297.3 1021 65.2
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1295.0 1229 60.1
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1278.5 929 71.9
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1273.5 1136 62.0
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1265.4 1139 60.6
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1215.3 1073 59.1
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1207.2 1013 64.4
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1201.8 1079 58.3
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1182.9 1082 57.8
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1119.4 1172 54.3
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1109.4 1123 51.8
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 3.7e-301 1038.5 706 75.8
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 1.6e-299 1033.1 784 67.2
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 4.7e-296 1021.5 1055 52.6
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 5.2e-295 1018.1 1141 52.8
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 9.8e-286 987.3 1040 53.8
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.6e-272 943.3 1075 49.5
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 2.8e-272 942.6 1076 48.1
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.8e-250 870.2 641 71.3
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.5e-249 867.1 661 68.8
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 8.5e-229 798.1 518 81.5
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.4e-228 797.3 594 69.0
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 7.7e-222 775.0 623 69.2
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 9.4e-212 741.5 533 72.4
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 1.3e-208 731.1 472 76.9
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.0e-189 668.3 859 49.1
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.2e-183 646.7 459 72.3
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 9.2e-175 618.6 410 75.1
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 4.3e-172 609.8 392 80.4
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 9.2e-167 592.0 627 54.4
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 1.8e-162 577.8 430 69.5
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 3.8e-144 516.9 367 74.7
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 5.8e-137 493.0 326 76.4
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 3.5e-134 483.8 392 67.1
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.5e-132 478.4 285 84.9
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.6e-131 474.9 315 79.7
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 2.3e-125 454.5 344 71.8
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.0e-117 429.1 854 37.8
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 7.4e-108 396.4 337 61.7
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.1e-102 378.3 241 78.8
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 8.5e-96 356.3 271 67.9
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 5.0e-80 303.9 223 70.4
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 2.2e-75 288.5 308 48.1
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 4.6e-65 254.2 175 77.7
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 3.4e-60 238.0 188 66.0
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 2.3e-56 225.3 184 64.1
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 9.8e-52 209.9 156 67.9
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.7e-43 182.6 150 60.7
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.5e-39 168.7 112 74.1
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 5.2e-37 161.0 118 67.8
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.8e-36 157.5 138 57.2
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 9.9e-36 156.8 127 71.7
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 9.9e-36 156.8 127 71.7
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 1.4e-34 152.9 203 45.3
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 7.1e-34 150.6 90 78.9
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 4.6e-33 147.9 100 72.0
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.5e-31 142.9 158 48.7
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 1.6e-30 139.4 93 75.3
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 3.6e-30 138.3 148 49.3
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 3.8e-27 128.3 99 64.6
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.3e-24 119.8 144 47.9
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.9e-23 115.9 95 68.4
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 4.3e-23 114.8 125 50.4
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 8.1e-22 110.5 205 38.0
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 2.4e-18 99.0 98 52.0
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.4e-18 99.0 69 71.0
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.2e-18 98.2 67 77.6
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 6.7e-16 90.9 165 36.4
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.4e-13 83.2 147 40.1
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 3.8e-11 75.1 59 66.1
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 4.9e-11 74.7 54 63.0
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 3.5e-09 68.6 78 48.7
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 3.0e-08 65.5 37 78.4
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 1.5e-07 63.2 45 66.7
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 1.3e-06 60.1 52 57.7


User provided reference genes

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