Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 4.2e-147 524.6 257 100.0
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 3.6e-122 441.8 230 94.3
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 9.4e-115 417.2 258 78.3
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 4.1e-110 401.7 256 78.9
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 1.4e-89 333.6 235 67.7
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 1.2e-88 330.5 239 69.0
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 7.5e-88 327.8 260 65.4
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 9.8e-88 327.4 260 63.8
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 4.9e-87 325.1 266 62.8
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 6.4e-87 324.7 259 63.7
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 5.4e-86 321.6 259 64.9
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 1.6e-85 320.1 258 64.3
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 6.0e-85 318.2 252 63.5
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 2.3e-84 316.2 258 62.4
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 3.9e-84 315.5 258 63.6
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 7.3e-83 311.2 241 66.0
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 2.8e-82 309.3 251 60.6
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 4.7e-82 308.5 227 67.0
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 5.2e-81 305.1 227 67.4
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 6.8e-81 304.7 261 60.9
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 2.0e-80 303.1 239 62.3
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 2.6e-80 302.8 233 65.2
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 4.4e-80 302.0 234 64.5
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 4.4e-80 302.0 259 58.7
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 5.8e-80 301.6 226 64.2
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 1.3e-79 300.4 226 63.7
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 5.4e-78 295.0 226 62.8
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 1.7e-76 290.0 238 60.9
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.9e-75 286.6 230 58.7
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 4.3e-75 285.4 235 62.1
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.8e-74 282.7 218 60.6
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 4.7e-74 282.0 238 61.3
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 4.7e-74 282.0 241 58.1
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 4.7e-74 282.0 206 64.1
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 6.2e-74 281.6 238 60.9
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 6.2e-74 281.6 247 58.3
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 1.4e-73 280.4 235 60.9
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.4e-73 280.4 230 57.4
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 1.4e-73 280.4 226 59.7
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.8e-73 280.0 231 61.0
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 2.3e-73 279.6 231 61.0
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 3.1e-73 279.3 245 57.6
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 2.0e-72 276.6 231 62.3
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 4.4e-72 275.4 214 57.9
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 4.4e-72 275.4 210 62.9
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 3.8e-71 272.3 201 65.2
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 8.4e-71 271.2 229 55.9
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 1.4e-70 270.4 232 56.5
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 3.2e-70 269.2 183 66.7
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 4.1e-70 268.9 231 60.6
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 4.1e-70 268.9 229 55.5
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 5.4e-70 268.5 219 56.6
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 1.2e-69 267.3 240 55.0
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 1.6e-69 266.9 232 56.9
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 2.3e-68 263.1 231 58.0
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 1.1e-67 260.8 234 54.7
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 1.5e-67 260.4 233 53.2
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 3.3e-67 259.2 222 58.6
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 3.3e-67 259.2 175 69.1
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 2.8e-66 256.1 237 53.2
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 1.1e-65 254.2 211 53.6
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 6.9e-65 251.5 234 53.4
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.2e-64 250.8 187 64.2
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.5e-64 250.4 243 49.4
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 3.4e-64 249.2 196 59.2
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 3.4e-64 249.2 189 57.7
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 4.4e-64 248.8 224 53.1
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 9.9e-64 247.7 172 66.3
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 3.2e-62 242.7 199 54.8
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 9.3e-62 241.1 205 61.0
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.0e-60 236.1 173 60.7
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 1.9e-59 233.4 244 48.4
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 1.3e-58 230.7 173 63.0
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.6e-58 230.3 228 51.8
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 1.4e-57 227.3 180 58.9
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 2.4e-57 226.5 180 58.9
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 3.1e-57 226.1 181 58.6
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 1.5e-56 223.8 239 47.7
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 2.0e-56 223.4 224 51.3
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 2.0e-56 223.4 224 51.3
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 2.9e-55 219.5 235 50.2
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 4.9e-55 218.8 227 50.7
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 8.4e-55 218.0 180 55.6
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 8.4e-55 218.0 224 49.6
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 2.4e-54 216.5 224 50.4
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 2.4e-54 216.5 224 50.4
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.2e-54 216.1 198 54.5
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 5.4e-54 215.3 178 56.2
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 9.3e-54 214.5 157 62.4
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 2.1e-53 213.4 226 49.6
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 7.4e-51 204.9 180 59.4
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 5.8e-48 195.3 197 54.3
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 1.0e-44 184.5 157 58.6
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 9.6e-43 177.9 214 38.8
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 1.6e-42 177.2 168 55.4
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 3.1e-41 172.9 180 49.4
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 4.0e-41 172.6 258 40.3
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 2.0e-40 170.2 127 63.0
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 1.7e-31 140.6 118 56.8
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.4e-30 137.5 236 33.1
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 1.6e-26 124.0 149 36.9
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 2.6e-24 116.7 219 34.7
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.4e-22 110.9 113 50.4
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 1.8e-20 104.0 194 29.4
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 3.9e-20 102.8 173 31.8
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 8.8e-20 101.7 171 31.6
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.3e-19 99.8 70 57.1
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 4.4e-19 99.4 84 57.1
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 7.4e-19 98.6 165 33.9
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.3e-18 97.8 84 54.8
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 1.3e-18 97.8 112 45.5
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 2.8e-18 96.7 173 31.8
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.7e-18 96.3 70 57.1
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 3.7e-18 96.3 110 49.1
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 3.1e-17 93.2 166 31.3
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 4.1e-17 92.8 225 26.7
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 1.2e-16 91.3 172 28.5
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 1.2e-16 91.3 232 25.0
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 2.0e-16 90.5 164 30.5
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 2.6e-16 90.1 164 30.5
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 2.6e-16 90.1 184 28.3
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 5.9e-16 89.0 212 28.3
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 5.9e-16 89.0 159 34.6
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 2.2e-15 87.0 172 26.7
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 3.8e-15 86.3 166 31.3
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 5.0e-15 85.9 229 26.6
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 6.5e-15 85.5 169 30.2
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 8.5e-15 85.1 215 26.5
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.1e-14 84.7 155 29.7
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 1.1e-14 84.7 140 30.7
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 1.4e-14 84.3 213 26.3
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 1.4e-14 84.3 172 26.2
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 1.9e-14 84.0 173 29.5
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 1.9e-14 84.0 166 30.7
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 1.9e-14 84.0 162 27.2
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 3.2e-14 83.2 174 28.2
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 7.2e-14 82.0 167 29.9
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 9.4e-14 81.6 213 23.5
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 3.6e-13 79.7 193 27.5
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 4.7e-13 79.3 166 27.7
Actinidia17847 Actinidia chinensis HOM05D000827 ORTHO05D008888 6.1e-13 79.0 80 51.2
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 6.1e-13 79.0 168 31.0
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 6.1e-13 79.0 187 26.2
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 1.0e-12 78.2 61 60.7
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 3.0e-12 76.6 172 25.6
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 3.0e-12 76.6 139 31.7
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 3.9e-12 76.3 159 26.4
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 1.5e-11 74.3 164 25.0
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 4.4e-11 72.8 134 28.4
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 5.7e-11 72.4 183 24.0
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 9.7e-11 71.6 187 28.9
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 2.2e-10 70.5 174 27.6
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 2.8e-10 70.1 136 24.3
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 1.4e-09 67.8 155 25.8
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 3.5e-08 63.2 156 26.9
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.0e-07 61.6 81 33.3
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 2.2e-07 60.5 157 26.8
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 3.8e-07 59.7 157 25.5
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 5.0e-07 59.3 145 24.8
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.9e-06 57.4 36 61.1
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 3.2e-06 56.6 168 26.2


User provided reference genes

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