Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 6.9e-254 880.2 451 100.0
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 4.0e-201 704.9 465 82.6
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 4.4e-168 595.1 463 68.7
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 1.3e-159 567.0 463 66.1
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.9e-142 510.0 464 59.9
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.4e-137 493.8 465 59.1
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 4.9e-135 485.3 464 58.8
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 4.2e-134 482.3 462 57.1
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 9.3e-134 481.1 474 57.2
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 8.2e-130 468.0 474 55.3
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.8e-129 466.8 469 56.7
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 2.2e-127 459.9 462 55.4
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 6.5e-127 458.4 457 57.1
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 1.1e-126 457.6 462 55.4
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 4.2e-126 455.7 469 52.7
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 6.1e-125 451.8 462 53.9
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 6.1e-125 451.8 462 54.8
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.4e-124 450.7 470 54.5
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 3.0e-124 449.5 462 53.7
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.0e-123 446.8 464 53.9
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 8.2e-122 441.4 470 53.2
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 9.1e-121 438.0 460 54.3
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 1.2e-120 437.6 464 53.4
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 2.6e-120 436.4 460 53.9
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 1.3e-119 434.1 459 53.6
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 1.7e-119 433.7 436 56.0
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 2.2e-119 433.3 462 53.9
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 3.8e-119 432.6 395 58.5
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 6.5e-119 431.8 463 51.8
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.1e-118 431.0 462 51.9
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.4e-118 430.6 454 52.4
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.4e-118 430.6 462 51.7
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 2.5e-118 429.9 464 51.7
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 3.2e-118 429.5 462 52.8
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.2e-118 429.1 468 53.2
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.6e-117 427.2 464 52.8
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 2.1e-117 426.8 446 52.5
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 4.7e-117 425.6 464 51.1
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 1.8e-116 423.7 452 52.4
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 8.8e-116 421.4 486 51.2
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 8.8e-116 421.4 402 55.0
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.6e-115 419.9 411 54.7
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.4e-115 419.1 459 51.0
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 5.7e-115 418.7 462 49.4
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 4.8e-114 415.6 463 50.1
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 4.8e-114 415.6 390 58.2
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.5e-112 409.1 473 49.9
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.5e-112 409.1 473 49.9
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.3e-111 407.5 466 49.1
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 1.1e-110 404.4 470 48.1
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.5e-110 403.3 464 49.1
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 9.4e-110 401.4 459 49.9
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 6.1e-109 398.7 459 49.9
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 1.0e-108 397.9 463 49.5
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 1.4e-108 397.5 462 47.0
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.4e-108 397.5 469 49.7
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 2.3e-108 396.7 468 48.7
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.0e-108 396.4 462 49.1
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 3.0e-108 396.4 463 49.0
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 3.0e-108 396.4 463 49.0
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 5.2e-108 395.6 462 47.6
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.1e-107 394.4 463 49.0
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.1e-107 394.4 463 47.9
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.1e-107 394.4 462 47.4
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 1.5e-107 394.0 474 48.1
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 5.7e-107 392.1 389 52.7
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 9.7e-107 391.3 465 47.5
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.3e-106 391.0 396 57.3
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.8e-106 389.8 463 48.6
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 4.8e-106 389.0 356 56.2
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 6.3e-106 388.7 392 55.4
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 8.2e-106 388.3 461 48.4
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 2.4e-105 386.7 462 46.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 7.0e-105 385.2 439 47.8
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 9.1e-105 384.8 462 46.8
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 9.1e-105 384.8 462 47.4
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 9.1e-105 384.8 474 46.4
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 1.6e-104 384.0 457 47.3
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.5e-102 376.7 473 48.2
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 9.4e-102 374.8 347 54.8
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 9.4e-102 374.8 351 55.3
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 1.8e-100 370.5 395 49.1
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 5.2e-100 369.0 382 50.8
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 7.5e-99 365.2 356 51.4
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 7.5e-99 365.2 347 53.0
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.3e-98 364.4 382 51.3
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 2.2e-98 363.6 457 43.5
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 2.8e-98 363.2 456 43.6
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 2.4e-97 360.1 394 49.2
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 9.1e-97 358.2 380 55.0
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.2e-96 357.8 380 52.9
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 2.7e-96 356.7 453 46.1
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 6.5e-95 352.1 451 45.5
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 2.5e-94 350.1 454 44.9
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 4.2e-94 349.4 423 46.8
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.6e-93 347.4 474 45.1
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.8e-92 344.0 360 50.6
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 3.4e-91 339.7 394 47.5
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 4.8e-90 335.9 345 49.9
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 9.1e-89 331.6 403 46.4
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.6e-88 330.9 380 46.8
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 3.8e-87 326.2 415 44.6
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 8.9e-84 315.1 460 40.4
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.2e-83 314.7 325 55.4
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 4.5e-80 302.8 417 44.8
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 5.2e-76 289.3 504 38.9
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 3.4e-75 286.6 365 45.2
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 2.2e-74 283.9 368 44.6
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 9.2e-73 278.5 272 52.2
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 3.9e-71 273.1 346 48.8
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 3.6e-69 266.5 454 39.6
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 1.4e-68 264.6 343 46.4
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 7.5e-67 258.8 339 44.2
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 3.3e-62 243.4 405 41.5
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 2.4e-52 210.7 336 41.4
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.8e-44 184.5 355 34.6
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 4.6e-40 169.9 122 68.9
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.5e-35 153.3 183 45.9
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 4.9e-34 149.8 175 46.3
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 1.9e-30 137.9 233 35.2
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 1.0e-26 125.6 352 25.9
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 6.5e-26 122.9 214 36.9
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 2.1e-24 117.9 102 60.8
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 8.7e-23 112.5 208 37.0
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.9e-22 111.3 340 25.3
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 9.6e-22 109.0 91 59.3
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.1e-21 107.8 88 62.5
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 6.9e-20 102.8 61 75.4
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 9.0e-20 102.4 128 43.8
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 4.5e-19 100.1 115 43.5
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 1.0e-18 99.0 137 40.9
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 5.0e-18 96.7 269 29.4
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 5.3e-12 76.6 344 20.9
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 9.0e-12 75.9 70 58.6
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.2e-11 75.5 276 23.6
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 8.5e-10 69.3 160 35.0
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 4.6e-08 63.5 112 37.5
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 4.6e-08 63.5 112 37.5
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.1e-07 60.1 39 61.5
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 2.5e-06 57.8 126 31.0
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 2.5e-06 57.8 59 54.2


User provided reference genes

Program Settings