Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.9e-107 392.5 198 100.0
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.7e-103 379.4 198 96.0
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 2.5e-91 339.0 198 86.9
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 2.4e-86 322.4 207 79.2
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 2.4e-78 295.8 198 74.7
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 4.2e-78 295.0 198 75.3
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.1e-78 294.3 199 74.9
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 9.3e-78 293.9 198 74.2
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 2.1e-77 292.7 198 75.8
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 2.7e-77 292.4 198 73.7
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 2.7e-77 292.4 198 73.7
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 4.6e-77 291.6 198 73.2
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 6.0e-77 291.2 198 73.2
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.0e-76 290.4 198 72.7
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.7e-76 289.7 195 75.9
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.7e-76 289.7 198 74.2
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 3.0e-76 288.9 197 74.1
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 5.1e-76 288.1 200 74.5
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 3.3e-75 285.4 198 73.2
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.6e-75 284.6 198 74.2
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 1.6e-74 283.1 198 70.7
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 1.1e-73 280.4 200 70.5
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.8e-73 279.6 197 72.1
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 2.4e-73 279.3 198 71.2
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 5.3e-73 278.1 197 69.5
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 6.9e-73 277.7 195 71.8
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.5e-72 276.6 196 71.9
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 2.6e-72 275.8 197 70.6
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 2.6e-72 275.8 200 73.0
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 9.9e-72 273.9 197 72.1
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 9.9e-72 273.9 194 73.7
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.7e-71 273.1 198 68.2
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.9e-71 272.3 194 73.2
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 3.8e-71 271.9 195 70.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.8e-71 271.9 197 70.1
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 8.4e-71 270.8 199 69.8
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.4e-70 269.2 193 72.0
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 2.4e-70 269.2 207 67.6
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 4.2e-70 268.5 198 67.7
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 5.5e-70 268.1 200 68.5
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 5.5e-70 268.1 204 65.7
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 5.5e-70 268.1 198 67.2
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.5e-70 268.1 198 68.7
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 7.1e-70 267.7 204 66.2
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 7.1e-70 267.7 202 68.3
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 9.3e-70 267.3 196 72.4
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.6e-69 266.5 191 70.7
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.7e-69 265.8 198 67.7
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 2.7e-69 265.8 200 66.5
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 7.9e-69 264.2 198 70.7
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.3e-68 263.5 198 70.7
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.8e-68 263.1 204 64.7
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.0e-68 262.3 199 67.8
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 3.0e-68 262.3 214 66.8
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.1e-68 261.5 198 69.7
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.7e-68 261.2 184 70.1
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 8.7e-68 260.8 196 67.3
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 8.7e-68 260.8 198 64.6
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.9e-67 259.6 214 66.8
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 2.5e-67 259.2 207 65.7
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.3e-67 258.8 196 66.3
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 3.3e-67 258.8 193 68.4
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.3e-66 256.9 192 68.2
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.6e-66 256.5 199 67.8
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.8e-66 255.8 207 65.2
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 6.2e-66 254.6 198 64.6
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 8.1e-66 254.2 207 64.7
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.8e-65 253.1 196 64.8
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.8e-65 253.1 198 63.1
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 4.0e-65 251.9 198 64.6
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 5.3e-65 251.5 198 62.6
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 2.6e-64 249.2 189 65.6
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.6e-64 249.2 192 63.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 3.4e-64 248.8 195 66.2
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 5.8e-64 248.1 198 62.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 7.6e-64 247.7 195 65.1
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.3e-63 246.9 198 64.6
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.1e-62 243.8 184 67.4
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 4.2e-62 241.9 199 59.8
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 9.3e-62 240.7 221 61.1
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.6e-61 240.0 211 62.1
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 3.5e-61 238.8 199 62.8
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 1.3e-60 236.9 197 64.5
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.0e-60 235.7 199 61.8
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 5.1e-60 235.0 198 62.6
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 1.5e-59 233.4 177 66.7
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.5e-59 232.6 186 64.5
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 4.3e-59 231.9 198 62.1
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 5.7e-59 231.5 191 62.3
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.3e-58 230.3 189 61.4
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 4.1e-57 225.3 299 45.8
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 4.1e-57 225.3 198 61.1
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 5.3e-57 224.9 194 61.9
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 5.3e-57 224.9 198 61.6
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 6.9e-57 224.6 198 58.1
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 9.0e-57 224.2 160 70.0
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.5e-56 223.4 259 51.4
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 2.0e-56 223.0 186 60.8
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 4.5e-56 221.9 196 59.7
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 4.5e-56 221.9 190 61.6
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 7.6e-56 221.1 190 61.6
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.3e-55 220.3 198 59.1
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 1.7e-55 219.9 199 58.3
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.1e-54 217.2 198 62.6
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.2e-54 215.7 195 61.0
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 5.5e-54 214.9 194 60.3
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 5.5e-54 214.9 200 58.5
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 7.2e-54 214.5 194 59.8
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 7.2e-54 214.5 197 58.9
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.2e-53 213.8 196 57.7
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.6e-53 213.4 194 59.8
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.6e-53 213.4 152 68.4
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 2.1e-53 213.0 194 59.3
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.9e-51 206.5 198 56.1
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 5.7e-51 204.9 193 59.6
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 5.7e-51 204.9 199 55.3
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 7.4e-51 204.5 195 56.9
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.3e-50 203.8 198 57.1
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 4.8e-50 201.8 198 57.1
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.0e-47 194.1 184 57.1
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.7e-47 193.4 161 62.1
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 7.9e-45 184.5 166 58.4
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 3.0e-44 182.6 127 68.5
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.2e-42 176.4 173 56.1
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 4.1e-41 172.2 177 50.3
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.1e-41 172.2 191 51.8
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.4e-40 169.1 193 53.4
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.9e-38 163.3 154 53.9
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 9.4e-38 161.0 181 50.8
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 1.8e-33 146.7 100 73.0
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 2.0e-32 143.3 118 63.6
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 4.2e-30 135.6 127 55.1
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 1.6e-29 133.7 98 64.3
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 2.7e-29 132.9 147 42.9
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.8e-28 127.9 100 61.0
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 9.7e-27 124.4 143 50.3
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 2.8e-26 122.9 120 51.7
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.1e-25 120.9 99 58.6
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 2.4e-25 119.8 99 64.6
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 2.9e-23 112.8 126 45.2
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.9e-23 112.8 148 45.3
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.0e-23 112.1 104 63.5
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 3.6e-21 105.9 117 52.1
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 8.0e-21 104.8 92 60.9
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.4e-20 104.0 117 48.7
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.8e-20 103.6 117 47.9
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.5e-19 100.5 129 45.0
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.2e-15 86.7 55 80.0
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 5.0e-15 85.5 123 42.3
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 5.0e-15 85.5 65 66.2
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 8.5e-15 84.7 135 37.8
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 9.4e-14 81.3 180 36.1
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 8.0e-13 78.2 65 63.1
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 3.0e-12 76.3 45 77.8
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 3.0e-12 76.3 66 65.2
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.4e-11 72.8 100 42.0
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 3.7e-10 69.3 57 63.2
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 1.5e-06 57.4 62 50.0
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 7.3e-06 55.1 30 76.7


User provided reference genes

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