Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 3.8e-114 414.8 210 100.0
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 8.0e-104 380.6 194 98.5
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 1.4e-100 369.8 211 89.6
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 5.4e-92 341.3 209 79.9
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 4.3e-89 331.6 209 78.0
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 7.3e-89 330.9 201 79.1
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 2.1e-88 329.3 205 78.5
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.3e-85 320.1 211 75.4
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.3e-85 320.1 210 75.2
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 2.9e-85 318.9 210 76.7
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 1.2e-83 313.5 210 71.9
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 3.5e-83 312.0 210 74.3
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 6.0e-83 311.2 210 73.8
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.0e-82 310.5 186 80.1
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.3e-82 309.3 205 70.7
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 3.0e-82 308.9 205 70.2
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 1.9e-81 306.2 210 71.4
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 9.5e-81 303.9 210 71.9
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 9.5e-81 303.9 205 73.7
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 8.0e-80 300.8 205 73.2
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.4e-79 300.1 210 68.6
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.4e-79 300.1 210 70.0
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 2.3e-79 299.3 211 70.1
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 3.1e-79 298.9 210 69.5
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 5.2e-79 298.1 209 69.4
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 2.0e-78 296.2 209 67.5
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 2.6e-78 295.8 210 71.4
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 4.4e-78 295.0 210 67.6
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 3.7e-77 292.0 227 63.0
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 4.9e-77 291.6 205 69.8
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 6.4e-77 291.2 188 73.4
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 2.1e-75 286.2 181 76.8
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 2.1e-75 286.2 201 69.2
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 2.7e-75 285.8 210 64.3
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 3.5e-75 285.4 209 66.5
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 6.0e-75 284.6 209 65.6
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 7.8e-75 284.3 210 64.8
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 3.0e-74 282.3 210 70.0
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 3.0e-74 282.3 210 70.0
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 3.0e-74 282.3 210 70.0
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 6.6e-74 281.2 211 64.9
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 1.5e-73 280.0 211 66.4
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.5e-73 280.0 211 66.4
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 1.5e-73 280.0 211 66.4
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 1.9e-73 279.6 209 65.6
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.9e-73 279.6 210 63.3
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 3.3e-73 278.9 209 63.6
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 4.3e-73 278.5 210 65.7
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.3e-73 278.5 211 65.9
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 7.3e-73 277.7 210 69.0
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.3e-73 277.7 211 65.9
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.3e-73 277.7 211 65.9
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 9.5e-73 277.3 211 65.4
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 9.5e-73 277.3 205 66.8
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 9.5e-73 277.3 211 65.4
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 1.2e-72 276.9 210 63.3
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.2e-72 276.9 211 64.5
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 1.2e-72 276.9 210 66.2
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.1e-72 276.2 210 64.8
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.1e-72 276.2 210 64.8
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 2.1e-72 276.2 210 64.8
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 4.7e-72 275.0 211 64.9
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 6.2e-72 274.6 215 61.9
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 6.2e-72 274.6 211 63.0
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 8.1e-72 274.2 208 65.4
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 8.1e-72 274.2 234 62.8
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 1.4e-71 273.5 205 65.9
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.4e-71 273.5 205 65.9
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.8e-71 273.1 208 64.9
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.0e-71 271.9 206 65.5
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 5.2e-71 271.6 205 65.4
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 2.0e-70 269.6 205 64.9
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.3e-69 266.9 209 61.2
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.3e-69 266.9 209 65.1
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 1.3e-69 266.9 217 61.8
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 2.2e-69 266.2 211 60.2
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 2.2e-69 266.2 211 61.1
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 3.7e-69 265.4 211 59.7
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 3.7e-69 265.4 209 61.2
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 6.4e-69 264.6 207 61.8
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 6.4e-69 264.6 211 63.5
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 1.9e-68 263.1 206 62.6
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 2.4e-68 262.7 156 80.8
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 5.4e-68 261.5 199 62.3
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 9.2e-68 260.8 200 67.5
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 3.5e-67 258.8 209 59.3
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 4.6e-67 258.5 208 61.5
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 3.9e-66 255.4 209 58.4
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 3.9e-66 255.4 210 65.2
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 8.6e-66 254.2 209 58.9
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 1.1e-65 253.8 209 58.9
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.9e-65 253.1 209 58.4
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 2.5e-65 252.7 209 58.4
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 4.3e-65 251.9 209 58.4
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 5.6e-65 251.5 204 58.3
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 5.6e-65 251.5 209 58.4
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 9.6e-65 250.8 208 61.1
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.2e-64 250.4 208 61.1
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.6e-64 250.0 209 57.9
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 4.7e-64 248.4 204 58.3
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 8.1e-64 247.7 205 59.0
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 6.8e-63 244.6 213 57.7
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 6.8e-63 244.6 191 64.4
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 2.6e-62 242.7 208 56.7
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 7.6e-62 241.1 190 61.1
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 6.0e-59 231.5 177 62.1
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 1.0e-58 230.7 154 70.8
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 3.3e-57 225.7 211 52.1
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.2e-54 217.2 144 70.1
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 5.4e-52 208.4 165 57.6
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 7.3e-49 198.0 113 83.2
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 3.4e-46 189.1 171 53.8
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 3.3e-41 172.6 133 69.2
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.8e-40 169.5 208 47.6
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 2.4e-31 139.8 176 43.8
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 2.0e-30 136.7 187 35.8
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 4.2e-28 129.0 192 40.1
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 1.2e-27 127.5 79 70.9
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 6.1e-27 125.2 108 50.0
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 2.8e-24 116.3 116 52.6
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 8.2e-24 114.8 63 77.8
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 5.7e-17 92.0 126 41.3
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 1.8e-15 87.0 50 74.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 9.1e-15 84.7 46 78.3
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 6.5e-13 78.6 59 61.0
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 1.2e-11 74.3 87 49.4
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 2.7e-11 73.2 55 61.8
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 3.0e-10 69.7 47 72.3
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 7.4e-09 65.1 49 63.3
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 8.2e-08 61.6 40 72.5
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 4.5e-06 55.8 82 39.0
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 7.7e-06 55.1 77 37.7


User provided reference genes

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