Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0553311 Helianthus annuus HOM05D002031 ORTHO05D002143 5.7e-49 197.2 96 100.0
HanXRQChr11g0330011 Helianthus annuus HOM05D002031 ORTHO05D002143 4.9e-24 114.4 62 88.7
HanXRQChr04g0099791 Helianthus annuus HOM05D002031 ORTHO05D002143 7.8e-22 107.1 62 83.9
HanXRQChr15g0492361 Helianthus annuus HOM05D002031 ORTHO05D002143 1.3e-21 106.3 62 79.0
ECA236G1750 Erigeron canadensis HOM05D002031 ORTHO05D002143 3.9e-21 104.8 62 80.6
ATR1098G041 Amborella trichopoda HOM05D002031 ORTHO05D002143 3.3e-20 101.7 62 72.6
CSS0015742 Camellia sinensis var. sinensis HOM05D002031 ORTHO05D002143 3.3e-20 101.7 62 72.6
Prupe.4G144300 Prunus persica HOM05D002031 ORTHO05D002143 3.3e-20 101.7 62 75.8
Sabra11G0126200 Salix brachista HOM05D002031 ORTHO05D002143 3.3e-20 101.7 58 82.8
COL.COLO4_38376 Corchorus olitorius HOM05D002031 ORTHO05D002143 4.3e-20 101.3 59 78.0
Duzib213G0092 Durio zibethinus HOM05D002031 ORTHO05D002143 4.3e-20 101.3 59 78.0
Sabra16G0291600 Salix brachista HOM05D002031 ORTHO05D002143 4.3e-20 101.3 65 75.4
RcHm_v2.0_Chr5g0027081 Rosa chinensis HOM05D002031 ORTHO05D002143 5.6e-20 100.9 62 75.8
Sabra16G0290500 Salix brachista HOM05D002031 ORTHO05D002143 5.6e-20 100.9 65 73.8
vmacro09449 Vaccinium macrocarpon HOM05D002031 ORTHO05D002143 5.6e-20 100.9 62 74.2
Cc05_g10020 Coffea canephora HOM05D002031 ORTHO05D002143 7.3e-20 100.5 62 74.2
SalBow7G1447 Salvia bowleyana HOM05D002031 ORTHO05D002143 7.3e-20 100.5 62 72.6
SalBow7G2823 Salvia bowleyana HOM05D002031 ORTHO05D002143 7.3e-20 100.5 62 72.6
MD05G1213700 Malus domestica HOM05D002031 ORTHO05D002143 9.5e-20 100.1 59 79.7
MD10G1197600 Malus domestica HOM05D002031 ORTHO05D002143 9.5e-20 100.1 59 78.0
SalBow7G1750 Salvia bowleyana HOM05D002031 ORTHO05D002143 9.5e-20 100.1 62 72.6
SalBow8G4653 Salvia bowleyana HOM05D002031 ORTHO05D002143 9.5e-20 100.1 62 72.6
arahy.Tifrunner.gnm1.ann1.PV2JBQ Arachis hypogaea HOM05D002031 ORTHO05D002143 1.6e-19 99.4 90 55.6
Rhsim04G0032300 Rhododendron simsii HOM05D002031 ORTHO05D002143 1.6e-19 99.4 62 72.6
Rhsim06G0183300 Rhododendron simsii HOM05D002031 ORTHO05D002143 1.6e-19 99.4 65 69.2
Migut.M00670 Erythranthe guttata HOM05D002031 ORTHO05D002143 2.1e-19 99.0 62 74.2
FvH4_3g16100 Fragaria vesca HOM05D002031 ORTHO05D002143 2.1e-19 99.0 62 72.6
FAN11G0136 Fragaria x ananassa HOM05D002031 ORTHO05D002143 2.1e-19 99.0 62 72.6
FAN16G0016 Fragaria x ananassa HOM05D002031 ORTHO05D002143 2.1e-19 99.0 62 72.6
FAN21G3742 Fragaria x ananassa HOM05D002031 ORTHO05D002143 2.1e-19 99.0 62 72.6
Lsat_1_v5_gn_7_99460 Lactuca sativa HOM05D002031 ORTHO05D002143 2.1e-19 99.0 59 76.3
Eucgr.F01437 Eucalyptus grandis HOM05D002031 ORTHO05D002143 2.8e-19 98.6 62 71.0
Gohir.D01G079500 Gossypium hirsutum HOM05D002031 ORTHO05D002143 2.8e-19 98.6 59 74.6
Gorai.002G104300 Gossypium raimondii HOM05D002031 ORTHO05D002143 2.8e-19 98.6 59 74.6
Peaxi162Scf00111g00527 Petunia axillaris HOM05D002031 ORTHO05D002143 2.8e-19 98.6 59 74.6
arahy.Tifrunner.gnm1.ann1.HGAE8N Arachis hypogaea HOM05D002031 ORTHO05D002143 3.6e-19 98.2 62 71.0
DCAR_013807 Daucus carota HOM05D002031 ORTHO05D002143 3.6e-19 98.2 59 72.9
Dinv21344 Davidia involucrata HOM05D002031 ORTHO05D002143 3.6e-19 98.2 62 71.0
Migut.H02058 Erythranthe guttata HOM05D002031 ORTHO05D002143 3.6e-19 98.2 59 76.3
Actinidia20593 Actinidia chinensis HOM05D002031 ORTHO05D002143 4.7e-19 97.8 62 71.0
FAN25G2027 Fragaria x ananassa HOM05D002031 ORTHO05D002143 4.7e-19 97.8 62 72.6
Potri.001G436300 Populus trichocarpa HOM05D002031 ORTHO05D002143 4.7e-19 97.8 59 76.3
Thecc.07G159700 Theobroma cacao HOM05D002031 ORTHO05D002143 4.7e-19 97.8 59 76.3
TAR624G1050 Trochodendron aralioides HOM05D002031 ORTHO05D002143 4.7e-19 97.8 65 67.7
Aa31LG7G2030 Aethionema arabicum HOM05D002031 ORTHO05D002143 6.2e-19 97.4 62 69.4
Lalb_Chr01g0015981 Lupinus albus HOM05D002031 ORTHO05D002143 6.2e-19 97.4 62 71.0
Manes.15G101300 Manihot esculenta HOM05D002031 ORTHO05D002143 6.2e-19 97.4 62 69.4
Hund02299 Selenicereus undatus HOM05D002031 ORTHO05D002143 6.2e-19 97.4 62 69.4
Aa31LG4G2620 Aethionema arabicum HOM05D002031 ORTHO05D002143 8.1e-19 97.1 59 72.9
Cpa.g.sc229.4 Carica papaya HOM05D002031 ORTHO05D002143 8.1e-19 97.1 62 67.7
CiPaw.12G007300 Carya illinoinensis HOM05D002031 ORTHO05D002143 8.1e-19 97.1 62 69.4
PGR031G0914 Punica granatum HOM05D002031 ORTHO05D002143 8.1e-19 97.1 62 71.0
TWI38G0655 Tripterygium wilfordii HOM05D002031 ORTHO05D002143 8.1e-19 97.1 62 67.7
Actinidia12334 Actinidia chinensis HOM05D002031 ORTHO05D002143 1.1e-18 96.7 62 71.0
CSS0037066 Camellia sinensis var. sinensis HOM05D002031 ORTHO05D002143 1.1e-18 96.7 62 69.4
CSS0037709 Camellia sinensis var. sinensis HOM05D002031 ORTHO05D002143 1.1e-18 96.7 62 69.4
Manes.03G090800 Manihot esculenta HOM05D002031 ORTHO05D002143 1.1e-18 96.7 62 69.4
Lalb_Chr25g0285241 Lupinus albus HOM05D002031 ORTHO05D002143 1.4e-18 96.3 62 69.4
MSTRG.12855 Avicennia marina HOM05D002031 ORTHO05D002143 1.8e-18 95.9 62 69.4
Eucgr.F01432 Eucalyptus grandis HOM05D002031 ORTHO05D002143 1.8e-18 95.9 62 67.7
Os05g0575300 Oryza sativa ssp. japonica HOM05D002031 ORTHO05D002143 1.8e-18 95.9 62 66.1
Phvul.005G054600 Phaseolus vulgaris HOM05D002031 ORTHO05D002143 1.8e-18 95.9 62 69.4
VMungo1080G0437 Vigna mungo HOM05D002031 ORTHO05D002143 1.8e-18 95.9 62 69.4
CDE06G2115 Ceratophyllum demersum HOM05D002031 ORTHO05D002143 2.3e-18 95.5 62 66.1
Haze_08514 Corylus avellana HOM05D002031 ORTHO05D002143 2.3e-18 95.5 62 69.4
CsaV3_4G037980 Cucumis sativus L. HOM05D002031 ORTHO05D002143 2.3e-18 95.5 62 66.1
Oeu012709.1 Olea europaea HOM05D002031 ORTHO05D002143 2.3e-18 95.5 62 67.7
Potri.011G140100 Populus trichocarpa HOM05D002031 ORTHO05D002143 2.3e-18 95.5 59 74.6
GSVIVG01020495001 Vitis vinifera HOM05D002031 ORTHO05D002143 2.3e-18 95.5 59 72.9
Cfa019443 Carpinus fangiana HOM05D002031 ORTHO05D002143 3.1e-18 95.1 62 67.7
CDE03G0137 Ceratophyllum demersum HOM05D002031 ORTHO05D002143 3.1e-18 95.1 62 66.1
ClCG11G016260 Citrullus lanatus HOM05D002031 ORTHO05D002143 3.1e-18 95.1 62 67.7
MELO3C010552.2 Cucumis melo HOM05D002031 ORTHO05D002143 3.1e-18 95.1 62 67.7
Gohir.A01G095300 Gossypium hirsutum HOM05D002031 ORTHO05D002143 3.1e-18 95.1 59 72.9
Nitab4.5_0004166g0050 Nicotiana tabacum HOM05D002031 ORTHO05D002143 3.1e-18 95.1 59 71.2
Solyc07g056020.3 Solanum lycopersicum HOM05D002031 ORTHO05D002143 3.1e-18 95.1 59 71.2
SGA_v2.0_scaffold73G24366 Striga asiatica HOM05D002031 ORTHO05D002143 3.1e-18 95.1 62 67.7
CARHR017800 Cardamine hirsuta HOM05D002031 ORTHO05D002143 4.0e-18 94.7 59 69.5
Glyma.15G253000 Glycine max HOM05D002031 ORTHO05D002143 4.0e-18 94.7 62 69.4
Nn4g26631 Nelumbo nucifera HOM05D002031 ORTHO05D002143 4.0e-18 94.7 62 69.4
Sed0013452 Sechium edule HOM05D002031 ORTHO05D002143 4.0e-18 94.7 62 66.1
TAR636G1001 Trochodendron aralioides HOM05D002031 ORTHO05D002143 4.0e-18 94.7 62 67.7
Actinidia35185 Actinidia chinensis HOM05D002031 ORTHO05D002143 5.2e-18 94.4 62 71.0
DCAR_017559 Daucus carota HOM05D002031 ORTHO05D002143 5.2e-18 94.4 59 69.5
Sopen07g029370 Solanum pennellii HOM05D002031 ORTHO05D002143 6.8e-18 94.0 59 69.5
PGSC0003DMG400031088 Solanum tuberosum HOM05D002031 ORTHO05D002143 6.8e-18 94.0 59 69.5
Zm00001eb286620 Zea mays HOM05D002031 ORTHO05D002143 6.8e-18 94.0 62 64.5
Zm00001eb286640 Zea mays HOM05D002031 ORTHO05D002143 6.8e-18 94.0 62 64.5
Glyma.08G174200 Glycine max HOM05D002031 ORTHO05D002143 8.9e-18 93.6 62 67.7
Zm00001eb250510 Zea mays HOM05D002031 ORTHO05D002143 8.9e-18 93.6 62 64.5
BcaB03g13012 Brassica carinata HOM05D002031 ORTHO05D002143 1.2e-17 93.2 62 66.1
A06p13140 Brassica napus HOM05D002031 ORTHO05D002143 1.2e-17 93.2 62 66.1
A08p31030 Brassica napus HOM05D002031 ORTHO05D002143 1.2e-17 93.2 62 66.1
BraA06t24472Z Brassica rapa HOM05D002031 ORTHO05D002143 1.2e-17 93.2 62 66.1
BraA08t35032Z Brassica rapa HOM05D002031 ORTHO05D002143 1.2e-17 93.2 62 66.1
Nitab4.5_0001612g0100 Nicotiana tabacum HOM05D002031 ORTHO05D002143 1.2e-17 93.2 59 69.5
QL04p073107 Quercus lobata HOM05D002031 ORTHO05D002143 1.2e-17 93.2 62 67.7
THA.LOC104812285 Tarenaya hassleriana HOM05D002031 ORTHO05D002143 1.2e-17 93.2 59 69.5
Dinv26637 Davidia involucrata HOM05D002031 ORTHO05D002143 1.5e-17 92.8 62 66.1
MBI02_g12197_MAGBIO Magnolia biondii HOM05D002031 ORTHO05D002143 1.5e-17 92.8 62 66.1
TWI38G0855 Tripterygium wilfordii HOM05D002031 ORTHO05D002143 1.5e-17 92.8 62 66.1
Actinidia18813 Actinidia chinensis HOM05D002031 ORTHO05D002143 2.0e-17 92.4 62 67.7
CAN.G585.3 Capsicum annuum HOM05D002031 ORTHO05D002143 2.0e-17 92.4 59 67.8
BcaB07g34040 Brassica carinata HOM05D002031 ORTHO05D002143 2.6e-17 92.0 62 64.5
Lj1A805T79 Lonicera japonica HOM05D002031 ORTHO05D002143 2.6e-17 92.0 58 72.4
Sp1g15360 Schrenkiella parvula HOM05D002031 ORTHO05D002143 2.6e-17 92.0 62 66.1
AL1G29460 Arabidopsis lyrata HOM05D002031 ORTHO05D002143 3.4e-17 91.7 62 64.5
AT1G17220 Arabidopsis thaliana HOM05D002031 ORTHO05D002143 3.4e-17 91.7 62 64.5
MSTRG.14998 Avicennia marina HOM05D002031 ORTHO05D002143 3.4e-17 91.7 62 66.1
Carub.0001s1697 Capsella rubella HOM05D002031 ORTHO05D002143 3.4e-17 91.7 62 64.5
CANSAT56G3161 Cannabis sativa HOM05D002031 ORTHO05D002143 4.4e-17 91.3 59 67.8
Ciclev10018663m.g Citrus clementina HOM05D002031 ORTHO05D002143 4.4e-17 91.3 59 64.4
Nn3g20354 Nelumbo nucifera HOM05D002031 ORTHO05D002143 4.4e-17 91.3 62 64.5
Aqoxy1G01663 Aquilegia oxysepala HOM05D002031 ORTHO05D002143 5.8e-17 90.9 62 66.1
Sc16g0003460 Simmondsia chinensis HOM05D002031 ORTHO05D002143 5.8e-17 90.9 59 69.5
unitig_747.g21595 Utricularia gibba HOM05D002031 ORTHO05D002143 5.8e-17 90.9 56 73.2
Atru.chr2.1845 Acer truncatum HOM05D002031 ORTHO05D002143 7.6e-17 90.5 59 67.8
Ah.04g163360 Amaranthus hybridus HOM05D002031 ORTHO05D002143 7.6e-17 90.5 62 67.7
BcaC05g25655 Brassica carinata HOM05D002031 ORTHO05D002143 7.6e-17 90.5 62 64.5
C05p15640 Brassica napus HOM05D002031 ORTHO05D002143 7.6e-17 90.5 62 64.5
BolC5t30271H Brassica oleracea HOM05D002031 ORTHO05D002143 7.6e-17 90.5 62 64.5
HPP92_016575 Vanilla planifolia HOM05D002031 ORTHO05D002143 9.9e-17 90.1 62 64.5
Ca_03484_v3 Cicer arietinum L. HOM05D002031 ORTHO05D002143 1.3e-16 89.7 62 64.5
Lj3g0011562 Lotus japonicus HOM05D002031 ORTHO05D002143 1.3e-16 89.7 62 64.5
Psat1g009920 Pisum sativum HOM05D002031 ORTHO05D002143 1.3e-16 89.7 62 62.9
BcaC07g38837 Brassica carinata HOM05D002031 ORTHO05D002143 1.7e-16 89.4 62 62.9
C08p17770 Brassica napus HOM05D002031 ORTHO05D002143 1.7e-16 89.4 62 62.9
BolC8t49403H Brassica oleracea HOM05D002031 ORTHO05D002143 1.7e-16 89.4 62 62.9
TPR.G27161 Trifolium pratense HOM05D002031 ORTHO05D002143 2.2e-16 89.0 59 66.1
Medtr2g064840 Medicago truncatula HOM05D002031 ORTHO05D002143 3.7e-16 88.2 59 64.4
PSO541G0296 Papaver somniferum HOM05D002031 ORTHO05D002143 6.4e-16 87.4 62 62.9
PSO675G7806 Papaver somniferum HOM05D002031 ORTHO05D002143 6.4e-16 87.4 62 62.9
HPP92_011058 Vanilla planifolia HOM05D002031 ORTHO05D002143 8.3e-16 87.0 62 59.7
EL10Ac4g08531 Beta vulgaris HOM05D002031 ORTHO05D002143 1.4e-15 86.3 62 62.9
SMO147G0028 Selaginella moellendorffii HOM05D002031 ORTHO05D002143 2.4e-15 85.5 62 61.3
vmacro12030 Vaccinium macrocarpon HOM05D002031 ORTHO05D002143 4.1e-15 84.7 56 67.9
AUR62041255 Chenopodium quinoa HOM05D002031 ORTHO05D002143 4.6e-14 81.3 62 59.7
AUR62041928 Chenopodium quinoa HOM05D002031 ORTHO05D002143 4.6e-14 81.3 62 59.7
Mapoly0085s0042 Marchantia polymorpha HOM05D002031 ORTHO05D002143 3.0e-13 78.6 59 59.3
Pp3c1_24000 Physcomitrium patens HOM05D002031 ORTHO05D002143 4.3e-12 74.7 59 50.8
AagrBONN_evm.TU.Sc2ySwM_344.5461 Anthoceros agrestis HOM05D002031 ORTHO05D002143 9.6e-12 73.6 62 54.8
PRCOL_00004967 Prasinoderma coloniale HOM05D002031 ORTHO05D002143 8.1e-11 70.5 62 51.6
Cre07.g341850 Chlamydomonas reinhardtii HOM05D002031 ORTHO05D002143 5.8e-09 64.3 62 46.8
Cc00_g18710 Coffea canephora HOM05D002031 ORTHO05D002143 4.9e-08 61.2 62 51.6
CBR_g39246 Chara braunii HOM05D002031 ORTHO05D002143 1.9e-07 59.3 57 49.1
Cc11_g03740 Coffea canephora HOM05D002031 ORTHO05D002143 4.2e-07 58.2 47 53.2


User provided reference genes

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