Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 2.3e-176 622.1 312 100.0
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 9.3e-149 530.4 310 84.8
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 5.3e-136 488.0 318 81.1
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 6.3e-121 438.0 318 71.7
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 1.8e-120 436.4 315 73.7
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 1.8e-120 436.4 282 77.0
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 6.9e-120 434.5 299 74.9
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 2.6e-119 432.6 298 75.5
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 1.0e-118 430.6 309 72.5
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 1.7e-118 429.9 316 71.8
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 2.9e-118 429.1 303 72.9
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 6.5e-118 427.9 312 72.4
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 6.5e-118 427.9 299 73.9
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 3.2e-117 425.6 289 75.4
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 9.4e-117 424.1 310 70.6
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 9.4e-117 424.1 303 71.6
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 1.2e-116 423.7 334 68.0
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 1.6e-116 423.3 322 69.6
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 2.7e-116 422.5 305 72.5
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 7.9e-116 421.0 312 69.9
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 1.0e-115 420.6 278 76.6
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 3.9e-115 418.7 302 72.2
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 1.1e-114 417.2 297 73.1
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 1.1e-114 417.2 314 69.7
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 1.5e-114 416.8 317 68.5
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 2.0e-114 416.4 290 72.1
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 5.7e-114 414.8 297 72.4
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 7.4e-114 414.5 289 74.4
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 9.7e-114 414.1 315 69.8
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 9.7e-114 414.1 314 71.0
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 1.3e-113 413.7 309 69.9
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 2.8e-113 412.5 287 72.5
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 6.3e-113 411.4 308 69.8
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 6.3e-113 411.4 297 71.7
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 6.3e-113 411.4 312 71.2
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 1.4e-112 410.2 314 69.7
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 1.8e-112 409.8 293 71.3
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 6.9e-112 407.9 303 70.6
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 6.9e-112 407.9 303 70.6
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 9.1e-112 407.5 311 68.5
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 2.0e-111 406.4 308 70.1
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 2.0e-111 406.4 310 69.4
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 2.6e-111 406.0 277 74.0
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 7.7e-111 404.4 300 67.3
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 1.0e-110 404.1 306 70.6
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 1.7e-110 403.3 301 70.1
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 2.9e-110 402.5 247 77.7
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 3.8e-110 402.1 295 72.2
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 5.0e-110 401.7 299 70.9
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 5.0e-110 401.7 273 75.5
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 6.5e-110 401.4 308 66.2
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 1.9e-109 399.8 247 77.7
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 3.2e-109 399.1 243 79.8
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 4.2e-109 398.7 294 69.7
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 7.2e-109 397.9 230 85.7
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 1.2e-108 397.1 299 67.6
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 1.6e-108 396.7 304 68.4
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 1.6e-108 396.7 304 68.4
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 1.6e-108 396.7 304 68.4
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 2.7e-108 396.0 244 78.3
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 7.9e-108 394.4 228 83.3
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 1.0e-107 394.0 290 71.0
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 1.4e-107 393.7 286 70.3
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 1.8e-107 393.3 247 75.3
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 3.0e-107 392.5 299 68.2
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 3.9e-107 392.1 242 78.5
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 3.9e-107 392.1 241 80.1
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 5.2e-107 391.7 242 78.1
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 5.2e-107 391.7 313 66.8
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 1.1e-106 390.6 305 68.2
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 1.5e-106 390.2 282 71.3
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 1.5e-106 390.2 274 71.9
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 1.5e-106 390.2 302 69.5
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 2.6e-106 389.4 303 67.7
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 3.3e-106 389.0 298 67.8
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 4.4e-106 388.7 304 66.8
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 1.7e-105 386.7 303 64.0
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 1.7e-105 386.7 239 77.8
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 3.7e-105 385.6 276 73.6
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 6.3e-105 384.8 295 67.1
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 3.5e-103 379.0 230 80.0
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 5.9e-103 378.3 312 66.3
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 2.9e-102 375.9 271 73.4
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 3.8e-102 375.6 239 78.2
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 3.2e-101 372.5 262 75.2
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 5.5e-101 371.7 278 66.9
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 4.8e-97 358.6 229 76.0
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 4.8e-97 358.6 305 61.3
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 7.0e-96 354.8 238 71.8
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 1.0e-94 350.9 234 74.4
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 1.7e-89 333.6 240 67.1
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 2.2e-89 333.2 263 68.4
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 3.1e-88 329.3 259 67.6
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 1.8e-83 313.5 272 60.3
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 5.7e-82 308.5 247 67.2
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 8.3e-81 304.7 209 75.6
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 9.5e-77 291.2 341 48.1
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 7.5e-74 281.6 182 73.6
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 9.8e-74 281.2 201 69.2
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 7.8e-71 271.6 221 65.2
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 1.3e-65 254.2 314 49.7
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 2.4e-64 250.0 204 66.7
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 2.8e-60 236.5 198 63.1
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 2.4e-56 223.4 240 50.0
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 8.4e-49 198.4 144 72.9
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 2.1e-47 193.7 113 81.4
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 7.8e-47 191.8 113 80.5
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 2.2e-41 173.7 104 80.8
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 3.0e-38 163.3 218 45.0
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 2.1e-31 140.6 221 42.1
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 1.8e-30 137.5 75 85.3
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 1.8e-22 110.9 210 37.6
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 4.5e-18 96.3 230 33.0
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 3.8e-17 93.2 63 77.8
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 4.5e-10 69.7 205 31.7
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 6.5e-09 65.9 59 57.6
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 1.2e-07 61.6 33 75.8
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 2.3e-06 57.4 188 30.9
DCAR_006105 Daucus carota HOM05D006935 ORTHO05D008944 6.7e-06 55.8 32 81.2


User provided reference genes

Program Settings