Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0472131 Helianthus annuus HOM05D005594 ORTHO05D006403 4.4e-86 321.2 161 100.0
HanXRQChr09g0253981 Helianthus annuus HOM05D005594 ORTHO05D006403 7.9e-51 204.1 137 78.1
ECA248G0412 Erigeron canadensis HOM05D005594 ORTHO05D006403 7.6e-46 187.6 146 69.2
HanXRQChr17g0561001 Helianthus annuus HOM05D005594 ORTHO05D006403 4.6e-43 178.3 95 96.8
Lsat_1_v5_gn_3_110060 Lactuca sativa HOM05D005594 ORTHO05D006403 2.9e-37 159.1 133 67.7
vmacro21357 Vaccinium macrocarpon HOM05D005594 ORTHO05D006403 1.6e-35 153.3 137 58.4
CSS0014517 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 6.0e-35 151.4 145 55.9
CSS0029582 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 7.9e-35 151.0 140 57.1
CiPaw.01G111900 Carya illinoinensis HOM05D005594 ORTHO05D006403 1.0e-34 150.6 141 56.0
CiPaw.07G163500 Carya illinoinensis HOM05D005594 ORTHO05D006403 1.0e-34 150.6 137 56.9
Rhsim06G0070100 Rhododendron simsii HOM05D005594 ORTHO05D006403 1.0e-34 150.6 146 55.5
GSVIVG01009200001 Vitis vinifera HOM05D005594 ORTHO05D006403 5.1e-34 148.3 137 56.9
Rhsim05G0205900 Rhododendron simsii HOM05D005594 ORTHO05D006403 1.1e-33 147.1 138 57.2
Actinidia19620 Actinidia chinensis HOM05D005594 ORTHO05D006403 1.5e-33 146.7 137 55.5
TAR381G1609 Trochodendron aralioides HOM05D005594 ORTHO05D006403 3.3e-33 145.6 137 56.9
PGR042G0833 Punica granatum HOM05D005594 ORTHO05D006403 4.3e-33 145.2 138 56.5
GSVIVG01026918001 Vitis vinifera HOM05D005594 ORTHO05D006403 9.7e-33 144.1 137 56.9
Eucgr.F02158 Eucalyptus grandis HOM05D005594 ORTHO05D006403 1.4e-31 140.2 138 55.8
Ciclev10001834m.g Citrus clementina HOM05D005594 ORTHO05D006403 2.4e-31 139.4 114 61.4
Oeu040880.1 Olea europaea HOM05D005594 ORTHO05D006403 3.1e-31 139.0 137 53.3
Haze_22483 Corylus avellana HOM05D005594 ORTHO05D006403 4.1e-31 138.7 141 51.1
DCAR_028088 Daucus carota HOM05D005594 ORTHO05D006403 5.3e-31 138.3 138 51.4
SalBow3G3026 Salvia bowleyana HOM05D005594 ORTHO05D006403 5.3e-31 138.3 135 51.9
Cc10_g08520 Coffea canephora HOM05D005594 ORTHO05D006403 9.0e-31 137.5 137 54.7
QL12p040902 Quercus lobata HOM05D005594 ORTHO05D006403 1.5e-30 136.7 137 54.0
MBI16_g06011_MAGBIO Magnolia biondii HOM05D005594 ORTHO05D006403 2.6e-30 136.0 137 51.8
Lj8A496G24 Lonicera japonica HOM05D005594 ORTHO05D006403 7.6e-30 134.4 137 52.6
SGA_v2.0_scaffold62G21352 Striga asiatica HOM05D000582 ORTHO05D006403 7.6e-30 134.4 139 52.5
Thecc.08G073300 Theobroma cacao HOM05D005594 ORTHO05D006403 7.6e-30 134.4 136 53.7
Dinv42597 Davidia involucrata HOM05D005594 ORTHO05D006403 1.0e-29 134.0 138 52.2
Duzib093G1195 Durio zibethinus HOM05D005594 ORTHO05D006403 1.0e-29 134.0 136 52.9
QL09p018366 Quercus lobata HOM05D005594 ORTHO05D006403 1.0e-29 134.0 123 56.1
Sed0005434 Sechium edule HOM05D005594 ORTHO05D006403 1.0e-29 134.0 137 48.9
Lj8A490G28 Lonicera japonica HOM05D005594 ORTHO05D006403 1.7e-29 133.3 137 52.6
CAN.G193.4 Capsicum annuum HOM05D005594 ORTHO05D006403 2.2e-29 132.9 138 52.2
TAR625G0360 Trochodendron aralioides HOM05D005594 ORTHO05D006403 2.9e-29 132.5 138 52.9
MELO3C003509.2 Cucumis melo HOM05D005594 ORTHO05D006403 3.8e-29 132.1 143 49.0
Prupe.1G535400 Prunus persica HOM05D005594 ORTHO05D006403 3.8e-29 132.1 141 49.6
Solyc04g076560.3 Solanum lycopersicum HOM05D005594 ORTHO05D006403 8.5e-29 131.0 137 51.8
CANSAT35G1072 Cannabis sativa HOM05D005594 ORTHO05D006403 1.4e-28 130.2 137 51.8
ClCG02G008140 Citrullus lanatus HOM05D005594 ORTHO05D006403 1.4e-28 130.2 139 50.4
Sopen04g030280 Solanum pennellii HOM05D005594 ORTHO05D006403 1.4e-28 130.2 137 51.8
PGSC0003DMG400008701 Solanum tuberosum HOM05D005594 ORTHO05D006403 1.4e-28 130.2 137 51.8
Nn1g05624 Nelumbo nucifera HOM05D005594 ORTHO05D006403 1.9e-28 129.8 137 51.8
unitig_26.g9553 Utricularia gibba HOM05D005594 ORTHO05D006403 1.9e-28 129.8 135 51.1
CsaV3_3G048080 Cucumis sativus L. HOM05D005594 ORTHO05D006403 2.5e-28 129.4 137 48.9
SGA_v2.0_scaffold13G06499 Striga asiatica HOM05D005594 ORTHO05D006403 2.5e-28 129.4 140 53.6
Sc15g0003090 Simmondsia chinensis HOM05D005594 ORTHO05D006403 3.2e-28 129.0 140 47.1
Gohir.A05G218700 Gossypium hirsutum HOM05D005594 ORTHO05D006403 5.5e-28 128.3 136 50.7
Migut.N00274 Erythranthe guttata HOM05D005594 ORTHO05D006403 7.2e-28 127.9 138 51.4
Gorai.009G228600 Gossypium raimondii HOM05D005594 ORTHO05D006403 1.6e-27 126.7 136 50.7
MD08G1202000 Malus domestica HOM05D005594 ORTHO05D006403 2.7e-27 125.9 140 47.1
Nitab4.5_0009755g0010 Nicotiana tabacum HOM05D005594 ORTHO05D006403 3.6e-27 125.6 141 50.4
Gohir.D05G221400 Gossypium hirsutum HOM05D005594 ORTHO05D006403 7.9e-27 124.4 136 50.0
Peaxi162Scf01112g00131 Petunia axillaris HOM05D005594 ORTHO05D006403 1.8e-26 123.2 137 46.7
Nitab4.5_0000131g0040 Nicotiana tabacum HOM05D005594 ORTHO05D006403 3.0e-26 122.5 139 47.5
Glyma.04G096700 Glycine max HOM05D005594 ORTHO05D006403 6.7e-26 121.3 137 48.2
PSO541G2296 Papaver somniferum HOM05D005594 ORTHO05D006403 6.7e-26 121.3 138 48.6
PSO675G6381 Papaver somniferum HOM05D005594 ORTHO05D006403 6.7e-26 121.3 138 48.6
EL10Ac1g00491 Beta vulgaris HOM05D005594 ORTHO05D006403 8.8e-26 120.9 139 47.5
FAN08G3514 Fragaria x ananassa HOM05D005594 ORTHO05D006403 8.8e-26 120.9 143 46.2
MSTRG.24680 Avicennia marina HOM05D005594 ORTHO05D006403 1.5e-25 120.2 137 48.2
FvH4_5g34380 Fragaria vesca HOM05D005594 ORTHO05D006403 3.3e-25 119.0 123 48.0
FAN18G0194 Fragaria x ananassa HOM05D005594 ORTHO05D006403 3.3e-25 119.0 123 48.0
Manes.18G056600 Manihot esculenta HOM05D005594 ORTHO05D006403 4.3e-25 118.6 137 48.9
Atru.chr13.987 Acer truncatum HOM05D005594 ORTHO05D006403 7.4e-25 117.9 138 46.4
Lj4g0023762 Lotus japonicus HOM05D005594 ORTHO05D006403 9.7e-25 117.5 137 46.0
VMungo1309G0327 Vigna mungo HOM05D005594 ORTHO05D006403 9.7e-25 117.5 140 47.1
COL.COLO4_35271 Corchorus olitorius HOM05D005594 ORTHO05D006403 1.7e-24 116.7 138 47.8
Glyma.06G098500 Glycine max HOM05D005594 ORTHO05D006403 1.7e-24 116.7 137 46.7
Aa31LG1G6880 Aethionema arabicum HOM05D005594 ORTHO05D006403 2.8e-24 115.9 138 48.6
Ah.07g203840 Amaranthus hybridus HOM05D005594 ORTHO05D006403 3.7e-24 115.5 150 44.7
CDE02G1340 Ceratophyllum demersum HOM05D005594 ORTHO05D006403 3.7e-24 115.5 136 44.9
Medtr3g099850 Medicago truncatula HOM05D005594 ORTHO05D006403 3.7e-24 115.5 137 45.3
HanXRQChr13g0407601 Helianthus annuus HOM05D005594 ORTHO05D006403 4.8e-24 115.2 76 81.6
PSO170G0052 Papaver somniferum HOM05D005594 ORTHO05D006403 4.8e-24 115.2 138 47.1
Hund26823 Selenicereus undatus HOM05D005594 ORTHO05D006403 4.8e-24 115.2 141 41.8
RcHm_v2.0_Chr7g0234971 Rosa chinensis HOM05D005594 ORTHO05D006403 6.3e-24 114.8 123 47.2
Lj1g0021697 Lotus japonicus HOM05D005594 ORTHO05D006403 8.2e-24 114.4 137 45.3
TWI31G0793 Tripterygium wilfordii HOM05D005594 ORTHO05D006403 1.8e-23 113.2 137 45.3
CiPaw.01G112000 Carya illinoinensis HOM05D005594 ORTHO05D006403 2.4e-23 112.8 94 59.6
FAN04G0064 Fragaria x ananassa HOM05D005594 ORTHO05D006403 3.1e-23 112.5 123 46.3
TPR.G6332 Trifolium pratense HOM05D005594 ORTHO05D006403 3.1e-23 112.5 132 44.7
Lalb_Chr23g0269971 Lupinus albus HOM05D005594 ORTHO05D006403 5.3e-23 111.7 135 45.2
Phvul.009G035100 Phaseolus vulgaris HOM05D005594 ORTHO05D006403 5.3e-23 111.7 137 46.0
arahy.Tifrunner.gnm1.ann1.7TC8PB Arachis hypogaea HOM05D005594 ORTHO05D006403 9.1e-23 110.9 137 46.0
arahy.Tifrunner.gnm1.ann1.X1J0TB Arachis hypogaea HOM05D005594 ORTHO05D006403 9.1e-23 110.9 137 46.0
THA.LOC104800630 Tarenaya hassleriana HOM05D005594 ORTHO05D006403 9.1e-23 110.9 138 44.9
HPP92_001778 Vanilla planifolia HOM05D005594 ORTHO05D006403 3.4e-22 109.0 137 43.8
ATR0767G044 Amborella trichopoda HOM05D005594 ORTHO05D006403 4.5e-22 108.6 137 45.3
Cpa.g.sc1556.4 Carica papaya HOM05D005594 ORTHO05D006403 7.7e-22 107.8 137 43.8
Oeu034716.2 Olea europaea HOM05D005594 ORTHO05D006403 7.7e-22 107.8 90 57.8
Sabra05G0119000 Salix brachista HOM05D005594 ORTHO05D006403 1.7e-21 106.7 137 43.8
SEGI_07360 Sequoiadendron giganteum HOM05D005594 ORTHO05D006403 1.7e-21 106.7 151 38.4
MD08G1202600 Malus domestica HOM05D005594 ORTHO05D006403 1.9e-20 103.2 142 42.3
Potri.005G152200 Populus trichocarpa HOM05D005594 ORTHO05D006403 1.9e-20 103.2 137 41.6
Psat5g049560 Pisum sativum HOM05D005594 ORTHO05D006403 5.5e-20 101.7 140 37.9
AT1G07840 Arabidopsis thaliana HOM05D005594 ORTHO05D006403 6.1e-19 98.2 135 44.4
Ca_26381_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 7.9e-19 97.8 137 40.1
CARHR007650 Cardamine hirsuta HOM05D005594 ORTHO05D006403 1.4e-18 97.1 137 44.5
AUR62014367 Chenopodium quinoa HOM05D005594 ORTHO05D006403 3.9e-18 95.5 139 41.0
Ca_11286_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 5.1e-18 95.1 137 38.7
AUR62019109 Chenopodium quinoa HOM05D005594 ORTHO05D006403 3.3e-17 92.4 119 44.5
BraA06t23703Z Brassica rapa HOM05D005594 ORTHO05D006403 4.4e-17 92.0 138 42.8
Pp3c26_12080 Physcomitrium patens HOM05D005594 ORTHO05D006403 4.4e-17 92.0 123 38.2
PGSC0003DMG400009352 Solanum tuberosum HOM05D005594 ORTHO05D006403 4.4e-17 92.0 85 55.3
Aqoxy5G01356 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 5.7e-17 91.7 109 41.3
BolC5t29354H Brassica oleracea HOM05D000310 ORTHO05D000509 9.7e-17 90.9 140 40.7
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 1.3e-16 90.5 138 42.0
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.3e-16 90.5 138 42.0
PSO017G1526 Papaver somniferum HOM05D005594 ORTHO05D006403 1.3e-16 90.5 126 42.9
Sp1g06520 Schrenkiella parvula HOM05D005594 ORTHO05D006403 6.3e-16 88.2 139 42.4
AL1G18120 Arabidopsis lyrata HOM05D005594 ORTHO05D006403 1.1e-15 87.4 138 42.0
Carub.0001s0718 Capsella rubella HOM05D005594 ORTHO05D006403 9.1e-15 84.3 134 44.0
Sed0022235 Sechium edule HOM05D005594 ORTHO05D006403 1.3e-13 80.5 113 39.8
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 3.8e-13 79.0 110 35.5
AagrBONN_evm.TU.Sc2ySwM_117.2374 Anthoceros agrestis HOM05D005594 ORTHO05D006403 6.5e-13 78.2 119 37.0
MD15G1388800 Malus domestica HOM05D005594 ORTHO05D006403 1.9e-12 76.6 85 45.9
BcaNung02661 Brassica carinata HOM05D005594 ORTHO05D006403 3.2e-12 75.9 105 43.8
Os01g0911000 Oryza sativa ssp. japonica HOM05D005594 ORTHO05D006403 3.2e-12 75.9 97 41.2
SMO140G0091 Selaginella moellendorffii HOM05D005594 ORTHO05D006403 4.2e-12 75.5 95 37.9
ClCG11G014680 Citrullus lanatus HOM05D005594 ORTHO05D006403 5.5e-12 75.1 125 36.8
Zm00001eb365030 Zea mays HOM05D005594 ORTHO05D006403 7.2e-12 74.7 136 33.8
Nitab4.5_0005345g0030 Nicotiana tabacum HOM05D005594 ORTHO05D006403 8.0e-11 71.2 98 40.8
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 1.0e-10 70.9 102 38.2
Zm00001eb388820 Zea mays HOM05D005594 ORTHO05D006403 1.4e-10 70.5 134 32.8
Lsat_1_v5_gn_8_154681 Lactuca sativa HOM05D002699 ORTHO05D002931 1.5e-09 67.0 56 62.5
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 4.4e-09 65.5 147 29.9
Zm00001eb306590 Zea mays HOM05D005594 ORTHO05D006403 1.7e-08 63.5 128 32.0
HPP92_001777 Vanilla planifolia HOM05D005594 ORTHO05D006403 4.1e-07 58.9 55 49.1
PSO229G0121 Papaver somniferum HOM05D005594 ORTHO05D006403 9.1e-07 57.8 92 37.0
PSO381G0016 Papaver somniferum HOM05D005594 ORTHO05D006403 9.1e-07 57.8 92 37.0
PSO640G0001 Papaver somniferum HOM05D005594 ORTHO05D006403 9.1e-07 57.8 92 37.0
Lsat_1_v5_gn_4_76100 Lactuca sativa HOM05D000154 ORTHO05D025749 2.6e-06 56.2 47 61.7


User provided reference genes

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