Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0456061 Helianthus annuus HOM05D000484 ORTHO05D000346 3.1e-40 167.9 81 100.0
HanXRQChr15g0483151 Helianthus annuus HOM05D000484 ORTHO05D000346 2.2e-09 65.5 32 87.5
Nitab4.5_0000193g0030 Nicotiana tabacum HOM05D000484 ORTHO05D000346 8.3e-09 63.5 32 84.4
CAN.G2.40 Capsicum annuum HOM05D000484 ORTHO05D000346 1.1e-08 63.2 32 81.2
Gohir.A05G232300 Gossypium hirsutum HOM05D000484 ORTHO05D000346 1.9e-08 62.4 32 81.2
Gohir.A05G268600 Gossypium hirsutum HOM05D000484 ORTHO05D000346 1.9e-08 62.4 32 81.2
Gohir.D05G234500 Gossypium hirsutum HOM05D000484 ORTHO05D000346 1.9e-08 62.4 32 81.2
Gorai.009G242800 Gossypium raimondii HOM05D000484 ORTHO05D000346 1.9e-08 62.4 32 81.2
Gorai.009G283000 Gossypium raimondii HOM05D000484 ORTHO05D000346 1.9e-08 62.4 32 81.2
Cc10_g10500 Coffea canephora HOM05D000484 ORTHO05D000346 3.2e-08 61.6 32 81.2
ECA246G2405 Erigeron canadensis HOM05D000484 ORTHO05D000346 3.2e-08 61.6 32 81.2
Migut.C01181 Erythranthe guttata HOM05D000484 ORTHO05D000346 3.2e-08 61.6 32 81.2
Lsat_1_v5_gn_6_109741 Lactuca sativa HOM05D000484 ORTHO05D000346 3.2e-08 61.6 32 81.2
Cpa.g.sc36.6 Carica papaya HOM05D000484 ORTHO05D000346 4.1e-08 61.2 32 81.2
DCAR_031245 Daucus carota HOM05D000484 ORTHO05D000346 4.1e-08 61.2 32 81.2
Nitab4.5_0000494g0010 Nicotiana tabacum HOM05D000484 ORTHO05D000346 4.1e-08 61.2 32 81.2
PGSC0003DMG400029029 Solanum tuberosum HOM05D000484 ORTHO05D000346 4.1e-08 61.2 32 78.1
COL.COLO4_05059 Corchorus olitorius HOM05D000484 ORTHO05D000346 5.4e-08 60.8 32 78.1
Duzib116G0854 Durio zibethinus HOM05D000484 ORTHO05D000346 5.4e-08 60.8 32 78.1
Migut.N03315 Erythranthe guttata HOM05D000484 ORTHO05D000346 5.4e-08 60.8 32 78.1
HanXRQChr05g0150561 Helianthus annuus HOM05D000484 ORTHO05D000346 5.4e-08 60.8 32 81.2
SGA_v2.0_scaffold28G12019 Striga asiatica HOM05D000484 ORTHO05D000346 5.4e-08 60.8 32 78.1
MELO3C003057.2 Cucumis melo HOM05D000484 ORTHO05D000346 9.2e-08 60.1 32 81.2
CsaV3_5G023290 Cucumis sativus L. HOM05D000484 ORTHO05D000346 9.2e-08 60.1 32 81.2
Eucgr.F03747 Eucalyptus grandis HOM05D000484 ORTHO05D000346 9.2e-08 60.1 32 78.1
Potri.002G088100 Populus trichocarpa HOM05D000484 ORTHO05D000346 9.2e-08 60.1 32 78.1
Sabra02G0069400 Salix brachista HOM05D000484 ORTHO05D000346 9.2e-08 60.1 32 78.1
SalBow6G5157 Salvia bowleyana HOM05D000484 ORTHO05D000346 9.2e-08 60.1 32 78.1
Thecc.08G118300 Theobroma cacao HOM05D000484 ORTHO05D000346 9.2e-08 60.1 32 78.1
Aa31LG7G5970 Aethionema arabicum HOM05D000484 ORTHO05D000346 1.2e-07 59.7 32 78.1
CSS0011267 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 1.2e-07 59.7 32 78.1
CiPaw.06G025700 Carya illinoinensis HOM05D000484 ORTHO05D000346 1.2e-07 59.7 32 75.0
Gohir.D05G270200 Gossypium hirsutum HOM05D000484 ORTHO05D000346 1.2e-07 59.7 32 78.1
Peaxi162Scf00084g00168 Petunia axillaris HOM05D000484 ORTHO05D000346 1.2e-07 59.7 32 75.0
Solyc11g013180.2 Solanum lycopersicum HOM05D000484 ORTHO05D000346 1.2e-07 59.7 32 75.0
Sopen11g008220 Solanum pennellii HOM05D000484 ORTHO05D000346 1.2e-07 59.7 32 75.0
SGA_v2.0_scaffold25G11100 Striga asiatica HOM05D000484 ORTHO05D000346 1.2e-07 59.7 32 75.0
GSVIVG01008931001 Vitis vinifera HOM05D000484 ORTHO05D000346 1.2e-07 59.7 32 75.0
Atru.chr13.1334 Acer truncatum HOM05D000484 ORTHO05D000346 1.6e-07 59.3 32 78.1
Atru.chr13.1377 Acer truncatum HOM05D000484 ORTHO05D000346 1.6e-07 59.3 32 78.1
CANSAT25G2257 Cannabis sativa HOM05D000484 ORTHO05D000346 1.6e-07 59.3 32 78.1
Oeu030033.1 Olea europaea HOM05D000484 ORTHO05D000346 1.6e-07 59.3 32 75.0
Oeu043784.2 Olea europaea HOM05D000484 ORTHO05D000346 1.6e-07 59.3 32 75.0
Oeu050260.1 Olea europaea HOM05D000484 ORTHO05D000346 1.6e-07 59.3 32 75.0
SalBow7G0243 Salvia bowleyana HOM05D000484 ORTHO05D000346 1.6e-07 59.3 32 78.1
SalBow7G4048 Salvia bowleyana HOM05D000484 ORTHO05D000346 1.6e-07 59.3 32 78.1
CiPaw.05G227600 Carya illinoinensis HOM05D000484 ORTHO05D000346 2.1e-07 58.9 32 75.0
Haze_00506 Corylus avellana HOM05D000484 ORTHO05D000346 2.1e-07 58.9 32 75.0
Lj4C591T4 Lonicera japonica HOM05D000484 ORTHO05D000346 2.1e-07 58.9 32 78.1
Lj4C598T2 Lonicera japonica HOM05D000484 ORTHO05D000346 2.1e-07 58.9 32 78.1
Potri.005G172800 Populus trichocarpa HOM05D000484 ORTHO05D000346 2.1e-07 58.9 32 78.1
Sabra05G0130300 Salix brachista HOM05D000484 ORTHO05D000346 2.1e-07 58.9 32 78.1
TWI12G1417 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 2.1e-07 58.9 32 78.1
AL1G35380 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
AT1G21980 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
AT1G77740 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
BcaB03g11889 Brassica carinata HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
BcaC07g39132 Brassica carinata HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
A08p28700 Brassica napus HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
C08p21220 Brassica napus HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
BolC8t49763H Brassica oleracea HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
BraA08t34800Z Brassica rapa HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
Carub.0001s2151 Capsella rubella HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
Carub.0002s2463 Capsella rubella HOM05D000484 ORTHO05D000346 2.7e-07 58.5 84 40.5
Thhalv10007966m.g Eutrema salsugineum HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
Sp1g19500 Schrenkiella parvula HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
THA.LOC104800182 Tarenaya hassleriana HOM05D000484 ORTHO05D000346 2.7e-07 58.5 32 75.0
Actinidia02598 Actinidia chinensis HOM05D000484 ORTHO05D000346 3.5e-07 58.2 32 75.0
AL2G37970 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 3.5e-07 58.2 32 75.0
CARHR071250 Cardamine hirsuta HOM05D000484 ORTHO05D000346 3.5e-07 58.2 32 75.0
Thhalv10018171m.g Eutrema salsugineum HOM05D000484 ORTHO05D000346 3.5e-07 58.2 32 75.0
Lj7A322T21 Lonicera japonica HOM05D000484 ORTHO05D000346 3.5e-07 58.2 32 75.0
Lj7C311T2 Lonicera japonica HOM05D000484 ORTHO05D000346 3.5e-07 58.2 32 75.0
MD08G1170300 Malus domestica HOM05D000484 ORTHO05D000346 3.5e-07 58.2 32 75.0
MD15G1357100 Malus domestica HOM05D000484 ORTHO05D000346 3.5e-07 58.2 32 75.0
ClCG03G009330 Citrullus lanatus HOM05D000484 ORTHO05D000346 4.6e-07 57.8 32 78.1
Actinidia23050 Actinidia chinensis HOM05D000484 ORTHO05D000346 6.0e-07 57.4 32 75.0
FvH4_2g26240 Fragaria vesca HOM05D000484 ORTHO05D000346 6.0e-07 57.4 32 75.0
FAN15G3241 Fragaria x ananassa HOM05D000484 ORTHO05D000346 6.0e-07 57.4 32 75.0
FAN20G0147 Fragaria x ananassa HOM05D000484 ORTHO05D000346 6.0e-07 57.4 32 75.0
FAN24G2952 Fragaria x ananassa HOM05D000484 ORTHO05D000346 6.0e-07 57.4 32 75.0
FAN27G1263 Fragaria x ananassa HOM05D000484 ORTHO05D000346 6.0e-07 57.4 32 75.0
Prupe.1G504100 Prunus persica HOM05D000484 ORTHO05D000346 6.0e-07 57.4 32 75.0
RcHm_v2.0_Chr6g0294851 Rosa chinensis HOM05D000484 ORTHO05D000346 6.0e-07 57.4 32 75.0
Sp5g32910 Schrenkiella parvula HOM05D000484 ORTHO05D000346 6.0e-07 57.4 32 71.9
Sed0012969 Sechium edule HOM05D000484 ORTHO05D000346 6.0e-07 57.4 32 75.0
MSTRG.25407 Avicennia marina HOM05D000484 ORTHO05D000346 7.8e-07 57.0 32 78.1
QL09p037055 Quercus lobata HOM05D000484 ORTHO05D000346 7.8e-07 57.0 32 75.0
Sed0012638 Sechium edule HOM05D000484 ORTHO05D000346 7.8e-07 57.0 32 75.0
SGA_v2.0_scaffold24G10499 Striga asiatica HOM05D000484 ORTHO05D000346 7.8e-07 57.0 32 78.1
SGA_v2.0_scaffold52G19014 Striga asiatica HOM05D000484 ORTHO05D000346 7.8e-07 57.0 31 74.2
DCAR_014118 Daucus carota HOM05D000484 ORTHO05D000346 1.0e-06 56.6 32 75.0
Hund16828 Selenicereus undatus HOM05D000484 ORTHO05D000346 1.0e-06 56.6 32 71.9
BcaB05g25072 Brassica carinata HOM05D000484 ORTHO05D000346 1.3e-06 56.2 33 66.7
PGR044G2389 Punica granatum HOM05D000484 ORTHO05D000346 1.3e-06 56.2 32 68.8
TPR.G32937 Trifolium pratense HOM05D000484 ORTHO05D000346 1.3e-06 56.2 32 75.0
Manes.02G159700 Manihot esculenta HOM05D000484 ORTHO05D000346 1.7e-06 55.8 32 71.9
Manes.18G073500 Manihot esculenta HOM05D000484 ORTHO05D000346 1.7e-06 55.8 32 71.9
Actinidia03502 Actinidia chinensis HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 71.9
Actinidia29439 Actinidia chinensis HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 71.9
BcaC03g15766 Brassica carinata HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 68.8
BcaNung06312 Brassica carinata HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 68.8
A02p21780 Brassica napus HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 68.8
C02p35080 Brassica napus HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 68.8
BolC2t09522H Brassica oleracea HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 68.8
BraA02t07183Z Brassica rapa HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 68.8
CSS0049669 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 71.9
Rhsim11G0065800 Rhododendron simsii HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 71.9
Sc01g0001460 Simmondsia chinensis HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 68.8
THA.LOC104817037 Tarenaya hassleriana HOM05D000484 ORTHO05D000346 2.3e-06 55.5 32 75.0
MSTRG.1481 Avicennia marina HOM05D000484 ORTHO05D000346 3.9e-06 54.7 32 75.0
PGR042G2828 Punica granatum HOM05D000484 ORTHO05D000346 3.9e-06 54.7 31 77.4
Hund27049 Selenicereus undatus HOM05D000484 ORTHO05D000346 3.9e-06 54.7 32 68.8
EL10Ac1g00025 Beta vulgaris HOM05D000484 ORTHO05D000346 5.1e-06 54.3 32 71.9
Ciclev10000334m.g Citrus clementina HOM05D000484 ORTHO05D000346 5.1e-06 54.3 32 68.8
TWI36G0476 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 5.1e-06 54.3 32 71.9
vmacro12542 Vaccinium macrocarpon HOM05D000484 ORTHO05D000346 5.1e-06 54.3 32 71.9
Rhsim06G0108400 Rhododendron simsii HOM05D000484 ORTHO05D000346 8.6e-06 53.5 32 68.8


User provided reference genes

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