Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 0.0e+00 1109.4 551 100.0
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 1.3e-254 882.9 527 84.4
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 1.6e-244 849.4 522 81.8
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 2.9e-214 748.8 522 71.6
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 2.2e-206 722.6 503 71.0
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 1.6e-204 716.5 460 73.9
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 6.1e-204 714.5 441 76.6
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 1.8e-203 713.0 460 73.5
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.0e-203 712.2 518 68.9
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 4.0e-203 711.8 460 74.6
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 5.7e-202 708.0 514 69.3
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.7e-201 706.4 493 70.2
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 2.2e-201 706.1 462 73.4
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 3.7e-201 705.3 504 70.4
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 8.3e-201 704.1 513 68.8
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 1.1e-200 703.7 505 68.9
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 1.1e-200 703.7 462 72.9
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 1.8e-200 703.0 501 68.3
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 4.1e-200 701.8 528 66.7
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 1.2e-199 700.3 497 70.8
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 1.6e-199 699.9 498 69.3
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 1.6e-199 699.9 548 65.1
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 1.0e-198 697.2 505 68.3
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 1.3e-198 696.8 480 70.6
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 1.7e-198 696.4 499 69.9
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 1.7e-198 696.4 476 71.2
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 2.3e-198 696.0 526 67.9
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 2.9e-198 695.7 502 67.7
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 6.6e-198 694.5 522 65.5
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.1e-197 693.7 460 71.5
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 9.5e-197 690.6 464 72.6
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 9.5e-197 690.6 464 72.8
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.2e-196 690.3 503 67.2
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 3.6e-196 688.7 523 65.6
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 4.7e-196 688.3 459 72.1
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 4.7e-196 688.3 524 66.8
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 4.7e-196 688.3 524 67.0
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 6.1e-196 688.0 535 64.3
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 8.0e-196 687.6 530 64.5
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.4e-195 686.8 519 65.7
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 5.2e-195 684.9 524 66.2
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 6.8e-195 684.5 459 71.7
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 1.2e-194 683.7 467 71.1
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 7.5e-194 681.0 529 65.0
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 7.5e-194 681.0 514 65.8
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 9.8e-194 680.6 530 65.3
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.3e-193 680.2 482 68.9
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 1.3e-193 680.2 460 70.7
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 3.7e-193 678.7 530 64.3
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 8.3e-193 677.6 512 66.0
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 4.1e-192 675.2 519 65.3
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.0e-190 670.6 483 67.3
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 3.9e-190 668.7 500 67.2
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 6.6e-190 667.9 524 64.5
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.5e-189 666.8 487 66.5
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.9e-189 666.4 468 68.4
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 1.9e-189 666.4 483 66.9
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 2.5e-189 666.0 489 65.2
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 9.5e-189 664.1 466 69.3
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 2.8e-188 662.5 517 64.8
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 6.2e-188 661.4 462 68.6
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 6.2e-188 661.4 499 65.7
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 8.0e-188 661.0 504 67.1
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 1.0e-187 660.6 487 66.7
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.4e-187 660.2 499 65.1
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.4e-187 660.2 466 68.7
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 6.8e-187 657.9 449 69.7
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 4.4e-186 655.2 488 66.6
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 9.2e-184 647.5 497 65.6
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 2.0e-183 646.4 460 68.0
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 7.8e-183 644.4 527 63.4
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 3.0e-182 642.5 485 64.9
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 3.9e-182 642.1 510 62.5
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 3.6e-180 635.6 528 62.9
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 2.6e-178 629.4 449 69.5
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 9.2e-176 620.9 549 57.9
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 9.2e-176 620.9 481 63.2
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.6e-175 620.2 507 62.3
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.5e-173 613.6 460 65.2
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 8.4e-169 597.8 405 71.6
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 6.6e-166 588.2 500 60.2
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 8.6e-166 587.8 483 58.6
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.1e-165 587.4 412 69.9
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 1.6e-164 583.6 420 67.1
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 5.8e-162 575.1 502 58.0
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 7.1e-160 568.2 514 56.8
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 3.5e-151 539.3 506 56.5
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.1e-147 526.2 317 77.9
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 3.8e-145 519.2 336 73.8
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 3.8e-145 519.2 357 71.7
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 2.1e-143 513.5 319 77.1
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 7.6e-138 495.0 472 51.1
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 6.5e-137 491.9 461 52.3
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 9.3e-136 488.0 499 53.9
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 1.6e-127 460.7 446 50.0
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.1e-120 438.0 330 66.4
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.6e-119 433.0 269 78.4
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 8.2e-116 421.8 413 53.8
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 9.1e-115 418.3 311 62.7
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 3.8e-105 386.3 391 49.4
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 9.7e-101 371.7 296 64.5
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 6.1e-95 352.4 386 48.4
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 1.2e-87 328.2 517 39.8
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 4.7e-87 326.2 389 47.0
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 1.7e-81 307.8 194 74.2
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 2.5e-80 303.9 260 59.2
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 4.7e-79 299.7 226 66.8
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 2.8e-71 273.9 251 59.0
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 1.5e-61 241.5 513 32.4
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 7.8e-42 176.0 119 65.5
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.0e-41 175.6 148 58.8
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 1.4e-30 138.7 449 29.0
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 1.4e-27 128.6 87 72.4
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 3.5e-26 124.0 96 63.5
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.1e-23 114.8 379 25.6
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.2e-23 113.2 83 65.1
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 8.4e-20 102.8 73 63.0
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 4.2e-19 100.5 73 60.3
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 7.9e-18 96.3 390 26.2
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 1.3e-15 89.0 69 60.9
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 1.6e-15 88.6 82 47.6
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 4.5e-13 80.5 81 51.9
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.9e-13 80.1 81 53.1
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.5e-11 74.7 83 48.2
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 1.6e-10 72.0 38 73.7
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 2.8e-07 61.2 36 66.7
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 2.8e-07 61.2 37 70.3


User provided reference genes

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