Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 2.9e-105 385.2 190 100.0
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 9.8e-85 317.0 205 81.5
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 9.6e-64 247.3 205 64.4
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.8e-62 243.0 205 62.4
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.6e-58 229.9 213 59.2
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 6.6e-57 224.6 205 58.5
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 1.1e-56 223.8 206 59.7
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 5.6e-56 221.5 205 57.6
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 6.2e-55 218.0 205 57.1
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.1e-54 217.2 204 56.4
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.6e-53 212.6 210 54.8
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 7.6e-53 211.1 207 58.0
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 9.9e-53 210.7 208 55.3
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 8.4e-52 207.6 205 54.6
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.1e-51 207.2 207 54.6
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.4e-51 206.8 209 54.1
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 3.2e-51 205.7 184 59.8
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 3.2e-51 205.7 205 54.1
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 5.4e-51 204.9 205 54.1
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 9.3e-51 204.1 210 53.8
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 9.3e-51 204.1 207 53.1
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 2.1e-50 203.0 205 55.1
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.7e-50 202.6 214 50.9
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 3.5e-50 202.2 208 54.8
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 6.0e-50 201.4 211 52.6
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.0e-49 200.7 207 52.2
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.0e-49 200.7 207 52.2
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.3e-49 200.3 205 53.7
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.7e-49 199.9 206 52.9
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 2.3e-49 199.5 187 56.7
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 3.0e-49 199.1 208 51.9
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 3.9e-49 198.7 170 60.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.6e-49 198.0 205 53.2
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 6.6e-49 198.0 207 50.2
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 6.6e-49 198.0 206 53.4
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 8.7e-49 197.6 159 61.6
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 8.7e-49 197.6 170 60.0
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.9e-48 196.4 206 51.9
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 2.5e-48 196.1 209 53.6
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 3.3e-48 195.7 206 51.5
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 4.3e-48 195.3 212 51.4
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 4.3e-48 195.3 204 53.4
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 4.3e-48 195.3 206 53.9
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 5.6e-48 194.9 205 52.7
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 5.6e-48 194.9 206 53.9
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 5.6e-48 194.9 206 52.9
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 9.6e-48 194.1 209 50.2
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.6e-47 193.4 207 53.6
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 2.1e-47 193.0 206 51.5
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 2.1e-47 193.0 204 53.4
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 4.8e-47 191.8 206 51.9
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 1.1e-46 190.7 206 52.4
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.8e-46 189.9 206 51.5
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.8e-46 189.9 206 51.0
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 5.3e-46 188.3 212 47.2
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.2e-45 187.2 206 51.5
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 2.0e-45 186.4 177 55.4
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.0e-45 186.4 206 51.0
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.6e-45 186.0 210 51.0
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 3.4e-45 185.7 204 52.0
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 4.5e-45 185.3 188 54.8
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 4.5e-45 185.3 196 52.6
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 5.8e-45 184.9 205 51.2
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 7.6e-45 184.5 186 53.2
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.7e-44 183.3 205 49.3
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 2.9e-44 182.6 186 50.5
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.8e-44 182.2 205 49.8
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 3.8e-44 182.2 195 52.3
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 3.8e-44 182.2 205 51.7
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.8e-44 182.2 205 50.2
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 3.8e-44 182.2 205 50.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 3.8e-44 182.2 205 51.7
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 3.8e-44 182.2 208 50.5
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 3.8e-44 182.2 205 48.3
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 4.9e-44 181.8 188 54.3
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 6.4e-44 181.4 205 50.7
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 6.4e-44 181.4 207 48.8
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 8.4e-44 181.0 188 54.8
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.1e-43 180.6 191 51.3
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.1e-43 180.6 208 49.0
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.1e-43 180.6 215 47.4
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.1e-43 180.6 226 45.1
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.4e-43 180.3 207 51.7
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.9e-43 179.9 206 50.0
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 2.4e-43 179.5 186 52.2
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 2.4e-43 179.5 186 52.2
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 4.2e-43 178.7 192 50.5
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.2e-43 178.7 205 49.3
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.2e-43 178.7 205 49.8
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 5.5e-43 178.3 178 53.4
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 7.1e-43 177.9 208 48.1
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 9.3e-43 177.6 174 55.2
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 9.3e-43 177.6 208 47.6
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 9.3e-43 177.6 206 50.0
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.2e-42 177.2 206 50.0
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.2e-42 177.2 160 54.4
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.6e-42 176.8 210 47.1
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 2.1e-42 176.4 187 50.8
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 2.1e-42 176.4 174 54.6
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 2.1e-42 176.4 232 45.7
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.1e-42 176.4 206 48.1
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 2.7e-42 176.0 174 54.6
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 3.5e-42 175.6 180 55.0
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 3.5e-42 175.6 175 54.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 3.5e-42 175.6 208 48.1
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 4.6e-42 175.3 209 49.8
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.0e-41 174.1 184 53.3
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.3e-41 173.7 175 54.9
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 1.8e-41 173.3 187 50.8
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 3.0e-41 172.6 159 54.7
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 3.0e-41 172.6 169 55.6
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 5.1e-41 171.8 170 54.7
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.5e-40 170.2 186 52.2
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.5e-40 170.2 187 49.7
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.9e-40 169.9 205 46.3
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 2.5e-40 169.5 208 47.1
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.3e-40 169.1 204 47.1
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 3.3e-40 169.1 213 47.9
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 1.6e-39 166.8 147 57.1
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.6e-39 166.8 175 53.1
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.1e-39 166.4 205 44.4
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.8e-39 165.2 157 54.8
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 6.2e-39 164.9 151 59.6
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 8.1e-39 164.5 147 56.5
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 8.1e-39 164.5 211 46.0
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.8e-38 163.3 147 55.1
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.8e-38 163.3 147 55.1
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.8e-38 163.3 207 47.8
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 2.4e-38 162.9 151 58.9
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 4.0e-38 162.2 157 54.1
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.0e-38 162.2 157 54.1
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.0e-38 162.2 157 54.1
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 4.0e-38 162.2 157 54.8
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.3e-38 161.8 157 54.1
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 9.0e-38 161.0 211 46.9
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 3.4e-37 159.1 190 48.4
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.3e-36 157.1 147 53.7
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 3.8e-36 155.6 211 45.5
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 8.4e-36 154.5 170 53.5
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 1.4e-35 153.7 189 49.2
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.9e-35 153.3 170 52.9
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 2.5e-35 152.9 126 64.3
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 9.3e-35 151.0 213 44.6
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 9.3e-35 151.0 105 70.5
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.8e-33 146.7 123 62.6
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.3e-31 140.6 166 51.2
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.6e-31 140.2 147 51.0
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 4.8e-31 138.7 147 49.0
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 2.0e-29 133.3 200 44.0
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 3.4e-29 132.5 187 46.0
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 4.5e-29 132.1 156 44.2
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.1e-27 127.5 124 58.1
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 1.6e-26 123.6 147 46.3
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 2.1e-26 123.2 153 45.8
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 2.7e-26 122.9 162 46.3
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 7.4e-24 114.8 199 37.2
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 9.7e-24 114.4 187 39.0
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.8e-22 110.2 150 43.3
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 3.1e-22 109.4 121 48.8
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.7e-20 103.6 147 43.5
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.2e-10 70.9 158 30.4
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 1.2e-10 70.9 56 62.5
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.6e-10 70.5 147 32.0
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 1.4e-09 67.4 119 33.6
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.7e-07 60.5 158 27.8
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.8e-07 59.7 145 31.0
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 3.7e-07 59.3 53 56.6


User provided reference genes

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