Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0391771 Helianthus annuus HOM05D000706 ORTHO05D001554 2.4e-57 225.3 116 100.0
HanXRQChr16g0506021 Helianthus annuus HOM05D000706 ORTHO05D001554 5.5e-38 161.0 73 98.6
Lsat_1_v5_gn_9_121500 Lactuca sativa HOM05D000706 ORTHO05D001554 3.1e-25 118.6 71 76.1
ECA246G4574 Erigeron canadensis HOM05D000706 ORTHO05D001554 1.2e-19 100.1 68 69.1
Hma1.2p1_0157F.1_g069010 Hydrangea macrophylla HOM05D000706 ORTHO05D001554 2.0e-19 99.4 68 61.8
Hma1.2p1_1368F.1_g278552 Hydrangea macrophylla HOM05D000706 ORTHO05D001554 2.0e-19 99.4 68 61.8
Prupe.1G582800 Prunus persica HOM05D000706 ORTHO05D001554 2.6e-19 99.0 71 57.7
Dinv29666 Davidia involucrata HOM05D000706 ORTHO05D001554 5.7e-19 97.8 71 56.3
Dinv29618 Davidia involucrata HOM05D000083 ORTHO05D001554 6.3e-18 94.4 79 51.9
MD15G1440700 Malus domestica HOM05D000706 ORTHO05D001554 6.3e-18 94.4 71 54.9
Sed0019522 Sechium edule HOM05D000706 ORTHO05D001554 1.4e-17 93.2 73 50.7
GSVIVG01023195001 Vitis vinifera HOM05D000706 ORTHO05D001554 1.4e-17 93.2 71 53.5
ClCG10G007330 Citrullus lanatus HOM05D000706 ORTHO05D001554 3.1e-17 92.0 72 51.4
EL10Ac6g14021 Beta vulgaris HOM05D000706 ORTHO05D001554 5.3e-17 91.3 66 59.1
HanXRQChr03g0065801 Helianthus annuus HOM05D000706 ORTHO05D001554 5.3e-17 91.3 72 61.1
QL02p102384 Quercus lobata HOM05D000706 ORTHO05D001554 5.3e-17 91.3 71 53.5
QL02p103021 Quercus lobata HOM05D000706 ORTHO05D001554 5.3e-17 91.3 71 53.5
Sed0004427 Sechium edule HOM05D000706 ORTHO05D001554 5.3e-17 91.3 72 48.6
CDE05G3431 Ceratophyllum demersum HOM05D000706 ORTHO05D001554 9.1e-17 90.5 79 51.9
Hma1.2p1_0157F.1_g069020 Hydrangea macrophylla HOM05D000706 ORTHO05D001554 9.1e-17 90.5 64 59.4
Hma1.2p1_1368F.1_g278554 Hydrangea macrophylla HOM05D000706 ORTHO05D001554 9.1e-17 90.5 64 59.4
arahy.Tifrunner.gnm1.ann1.2RX12T Arachis hypogaea HOM05D000706 ORTHO05D001554 1.2e-16 90.1 71 47.9
ATR1089G079 Amborella trichopoda HOM05D000706 ORTHO05D001554 2.0e-16 89.4 74 50.0
MELO3C016482.2 Cucumis melo HOM05D000706 ORTHO05D001554 2.0e-16 89.4 72 51.4
Sopen01g045670 Solanum pennellii HOM05D000706 ORTHO05D001554 2.0e-16 89.4 70 52.9
Glyma.11G208500 Glycine max HOM05D000706 ORTHO05D001554 2.7e-16 89.0 70 50.0
Hund07206 Selenicereus undatus HOM05D000706 ORTHO05D001554 2.7e-16 89.0 69 55.1
CsaV3_3G006570 Cucumis sativus L. HOM05D000706 ORTHO05D001554 3.5e-16 88.6 72 50.0
Peaxi162Scf00011g01540 Petunia axillaris HOM05D000706 ORTHO05D001554 3.5e-16 88.6 70 50.0
vmacro01003 Vaccinium macrocarpon HOM05D000706 ORTHO05D001554 3.5e-16 88.6 71 49.3
vmacro23051 Vaccinium macrocarpon HOM05D000706 ORTHO05D001554 3.5e-16 88.6 71 49.3
Rhsim06G0200300 Rhododendron simsii HOM05D000706 ORTHO05D001554 4.5e-16 88.2 70 54.3
Sopen01g045700 Solanum pennellii HOM05D000706 ORTHO05D001554 7.7e-16 87.4 93 43.0
Aqoxy4G01481 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 1.7e-15 86.3 74 47.3
arahy.Tifrunner.gnm1.ann1.3KND2G Arachis hypogaea HOM05D000706 ORTHO05D001554 1.7e-15 86.3 71 45.1
CSS0020172 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001554 3.8e-15 85.1 68 54.4
CSS0038338 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001554 3.8e-15 85.1 68 54.4
Rhsim12G0008900 Rhododendron simsii HOM05D000706 ORTHO05D001554 3.8e-15 85.1 65 53.8
AUR62000556 Chenopodium quinoa HOM05D000706 ORTHO05D001554 6.5e-15 84.3 79 50.6
Thecc.02G012800 Theobroma cacao HOM05D000706 ORTHO05D001554 6.5e-15 84.3 71 46.5
Cc02_g23430 Coffea canephora HOM05D000706 ORTHO05D001554 8.5e-15 84.0 64 51.6
Migut.B00732 Erythranthe guttata HOM05D000706 ORTHO05D001554 8.5e-15 84.0 71 47.9
Atru.chr7.1194 Acer truncatum HOM05D000706 ORTHO05D001554 1.1e-14 83.6 72 45.8
Aqoxy4G01705 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 1.1e-14 83.6 74 45.9
Atru.chr6.383 Acer truncatum HOM05D000706 ORTHO05D001554 1.5e-14 83.2 63 54.0
Atru.chr7.982 Acer truncatum HOM05D000706 ORTHO05D001554 1.5e-14 83.2 72 44.4
QL05p071871 Quercus lobata HOM05D000706 ORTHO05D001554 1.9e-14 82.8 71 45.1
vmacro19843 Vaccinium macrocarpon HOM05D000706 ORTHO05D001554 1.9e-14 82.8 70 51.4
Gohir.D04G177400 Gossypium hirsutum HOM05D000706 ORTHO05D001554 3.2e-14 82.0 71 43.7
Gorai.012G170300 Gossypium raimondii HOM05D000706 ORTHO05D001554 3.2e-14 82.0 71 43.7
Nitab4.5_0001057g0200 Nicotiana tabacum HOM05D000706 ORTHO05D001554 3.2e-14 82.0 62 53.2
Ca_17061_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 4.2e-14 81.6 71 49.3
Duzib132G0489 Durio zibethinus HOM05D000706 ORTHO05D001554 4.2e-14 81.6 71 46.5
Gohir.A04G134200 Gossypium hirsutum HOM05D000706 ORTHO05D001554 4.2e-14 81.6 71 42.3
VMungo0540G0587 Vigna mungo HOM05D000706 ORTHO05D001554 4.2e-14 81.6 68 48.5
Actinidia01625 Actinidia chinensis HOM05D000706 ORTHO05D001554 5.5e-14 81.3 64 50.0
PGR119G1836 Punica granatum HOM05D000706 ORTHO05D001554 5.5e-14 81.3 67 47.8
PGSC0003DMG400024880 Solanum tuberosum HOM05D000706 ORTHO05D001554 5.5e-14 81.3 70 48.6
AUR62006908 Chenopodium quinoa HOM05D000706 ORTHO05D001554 7.2e-14 80.9 79 49.4
COL.COLO4_17687 Corchorus olitorius HOM05D000706 ORTHO05D001554 7.2e-14 80.9 71 42.3
Eucgr.J00652 Eucalyptus grandis HOM05D000706 ORTHO05D001554 7.2e-14 80.9 71 46.5
Nitab4.5_0002546g0030 Nicotiana tabacum HOM05D000706 ORTHO05D001554 7.2e-14 80.9 62 53.2
Atru.chr6.356 Acer truncatum HOM05D000706 ORTHO05D001554 9.4e-14 80.5 72 44.4
Atru.chr6.382 Acer truncatum HOM05D000706 ORTHO05D001554 9.4e-14 80.5 65 49.2
PSO210G5296 Papaver somniferum HOM05D000706 ORTHO05D001554 9.4e-14 80.5 66 50.0
EL10Ac4g09662 Beta vulgaris HOM05D000706 ORTHO05D001554 1.2e-13 80.1 70 47.1
Lj6g0002814 Lotus japonicus HOM05D000706 ORTHO05D001554 1.6e-13 79.7 68 48.5
MBI03_g29110_MAGBIO Magnolia biondii HOM05D000706 ORTHO05D001554 2.1e-13 79.3 71 46.5
Medtr3g064270 Medicago truncatula HOM05D000706 ORTHO05D001554 2.7e-13 79.0 68 50.0
MSTRG.16476 Avicennia marina HOM05D000706 ORTHO05D001554 3.6e-13 78.6 71 47.9
Solyc01g103310.4 Solanum lycopersicum HOM05D000706 ORTHO05D001554 3.6e-13 78.6 72 44.4
Solyc01g150153.1 Solanum lycopersicum HOM05D000706 ORTHO05D001554 3.6e-13 78.6 72 44.4
HPP92_025447 Vanilla planifolia HOM05D000706 ORTHO05D001554 3.6e-13 78.6 63 52.4
Medtr3g064300 Medicago truncatula HOM05D000706 ORTHO05D001554 4.7e-13 78.2 71 47.9
TWI59G0710 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 4.7e-13 78.2 73 43.8
Medtr3g064280 Medicago truncatula HOM05D000706 ORTHO05D001554 6.1e-13 77.8 71 49.3
QL09p026796 Quercus lobata HOM05D000706 ORTHO05D001554 6.1e-13 77.8 64 51.6
HanXRQChr01g0026651 Helianthus annuus HOM05D000706 ORTHO05D001554 8.0e-13 77.4 36 100.0
Sc16g0009690 Simmondsia chinensis HOM05D000706 ORTHO05D001554 1.0e-12 77.0 74 47.3
TPR.G37369 Trifolium pratense HOM05D000706 ORTHO05D001554 1.4e-12 76.6 68 50.0
Ah.03g136980 Amaranthus hybridus HOM05D000572 ORTHO05D000840 2.3e-12 75.9 59 57.6
Os05g0420800 Oryza sativa ssp. japonica HOM05D000706 ORTHO05D001554 2.3e-12 75.9 72 45.8
Solyc03g033630.3 Solanum lycopersicum HOM05D000706 ORTHO05D001633 2.3e-12 75.9 65 44.6
Sopen03g006420 Solanum pennellii HOM05D000706 ORTHO05D001633 2.3e-12 75.9 65 44.6
PGSC0003DMG400022537 Solanum tuberosum HOM05D000706 ORTHO05D001633 2.3e-12 75.9 65 44.6
Ciclev10004009m.g Citrus clementina HOM05D000706 ORTHO05D001554 3.0e-12 75.5 70 45.7
Lalb_Chr18g0053791 Lupinus albus HOM05D000706 ORTHO05D001554 3.0e-12 75.5 66 48.5
Psat5g143680 Pisum sativum HOM05D000706 ORTHO05D001554 3.0e-12 75.5 70 45.7
Psat5g143560 Pisum sativum HOM05D000706 ORTHO05D001554 4.0e-12 75.1 70 45.7
SHI11424 Sapria himalayana HOM05D000706 ORTHO05D001554 5.2e-12 74.7 73 42.5
Cfa003743 Carpinus fangiana HOM05D000706 ORTHO05D001554 6.8e-12 74.3 71 45.1
Zm00001eb349090 Zea mays HOM05D000706 ORTHO05D001554 1.5e-11 73.2 72 44.4
Ciclev10000408m.g Citrus clementina HOM05D000706 ORTHO05D001554 2.0e-11 72.8 64 50.0
Lalb_Chr18g0053821 Lupinus albus HOM05D062398 ORTHO05D001554 2.0e-11 72.8 63 47.6
SGA_v2.0_scaffold131G34398 Striga asiatica HOM05D000706 ORTHO05D001554 2.0e-11 72.8 75 42.7
MSTRG.23284 Avicennia marina HOM05D000706 ORTHO05D001633 7.5e-11 70.9 76 40.8
Lj2g0017487 Lotus japonicus HOM05D000706 ORTHO05D001633 7.5e-11 70.9 69 40.6
PSO447G0242 Papaver somniferum HOM05D000706 ORTHO05D001554 7.5e-11 70.9 66 47.0
Peaxi162Scf00152g01634 Petunia axillaris HOM05D000706 ORTHO05D001554 9.8e-11 70.5 64 50.0
Pp3c15_12580 Physcomitrium patens HOM05D000706 ORTHO05D001633 9.8e-11 70.5 71 33.8
Pp3c15_12700 Physcomitrium patens HOM05D000706 ORTHO05D001633 9.8e-11 70.5 71 33.8
SGA_v2.0_scaffold2G01248 Striga asiatica HOM05D000706 ORTHO05D001633 9.8e-11 70.5 66 42.4
Zm00001eb404070 Zea mays HOM05D000706 ORTHO05D001633 9.8e-11 70.5 100 38.0
Gohir.D10G090700 Gossypium hirsutum HOM05D000706 ORTHO05D001633 1.3e-10 70.1 60 43.3
Gorai.011G099700 Gossypium raimondii HOM05D000706 ORTHO05D001633 1.3e-10 70.1 60 43.3
Lj6g0005324 Lotus japonicus HOM05D000706 ORTHO05D001554 1.3e-10 70.1 71 45.1
Sed0026228 Sechium edule HOM05D000706 ORTHO05D001633 1.3e-10 70.1 76 40.8
Os01g0884500 Oryza sativa ssp. japonica HOM05D000706 ORTHO05D001554 2.2e-10 69.3 74 43.2
Zm00001eb000870 Zea mays HOM05D000706 ORTHO05D001633 2.2e-10 69.3 100 38.0
Phvul.006G085533 Phaseolus vulgaris HOM05D000706 ORTHO05D001554 2.8e-10 68.9 70 42.9
Os09g0530500 Oryza sativa ssp. japonica HOM05D000706 ORTHO05D001633 3.7e-10 68.6 76 38.2
Sed0017742 Sechium edule HOM05D000706 ORTHO05D001633 3.7e-10 68.6 70 40.0
Prupe.1G559800 Prunus persica HOM05D000706 ORTHO05D001554 6.3e-10 67.8 61 47.5
CARHR277610 Cardamine hirsuta HOM05D000706 ORTHO05D001554 1.1e-09 67.0 65 41.5
Haze_15725 Corylus avellana HOM05D000706 ORTHO05D001554 1.1e-09 67.0 61 47.5
arahy.Tifrunner.gnm1.ann1.MV74CA Arachis hypogaea HOM05D000706 ORTHO05D001633 1.4e-09 66.6 61 44.3
Ah.06g188540 Amaranthus hybridus HOM05D000706 ORTHO05D001554 2.4e-09 65.9 50 60.0
BolC9t53862H Brassica oleracea HOM05D000706 ORTHO05D001554 2.4e-09 65.9 73 35.6
CANSAT56G3698 Cannabis sativa HOM05D000706 ORTHO05D001554 2.4e-09 65.9 71 35.2
Aqoxy5G01492 Aquilegia oxysepala HOM05D000706 ORTHO05D001633 3.1e-09 65.5 66 39.4
arahy.Tifrunner.gnm1.ann1.MF3J08 Arachis hypogaea HOM05D000706 ORTHO05D001633 3.1e-09 65.5 61 42.6
A09p08390 Brassica napus HOM05D000706 ORTHO05D001554 3.1e-09 65.5 75 33.3
C09p09500 Brassica napus HOM05D000706 ORTHO05D001554 3.1e-09 65.5 73 34.2
Gohir.A10G097500 Gossypium hirsutum HOM05D000706 ORTHO05D001633 3.1e-09 65.5 60 41.7
Thecc.05G211200 Theobroma cacao HOM05D000706 ORTHO05D001554 3.1e-09 65.5 71 40.8
CsaV3_3G007310 Cucumis sativus L. HOM05D000706 ORTHO05D001554 4.1e-09 65.1 58 43.1
Lj9A282T34 Lonicera japonica HOM05D000706 ORTHO05D001554 4.1e-09 65.1 68 41.2
TPR.G2360 Trifolium pratense HOM05D000706 ORTHO05D001633 5.4e-09 64.7 61 41.0
Zm00001eb043720 Zea mays HOM05D000706 ORTHO05D001633 5.4e-09 64.7 66 40.9
HanXRQChr15g0465191 Helianthus annuus HOM05D000706 ORTHO05D001633 7.0e-09 64.3 71 35.2
Sp2g26800 Schrenkiella parvula HOM05D000706 ORTHO05D001554 7.0e-09 64.3 73 34.2
Thecc.01G023200 Theobroma cacao HOM05D000706 ORTHO05D001633 7.0e-09 64.3 52 46.2
THA.LOC104800303 Tarenaya hassleriana HOM05D000706 ORTHO05D001554 9.1e-09 63.9 68 36.8
Potri.011G078050 Populus trichocarpa HOM05D000706 ORTHO05D001554 1.6e-08 63.2 57 43.9
Duzib177G0677 Durio zibethinus HOM05D000706 ORTHO05D001554 2.0e-08 62.8 71 39.4
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 2.7e-08 62.4 72 34.7
BraA09t36489Z Brassica rapa HOM05D000706 ORTHO05D001554 2.7e-08 62.4 73 32.9
Duzib264G0704 Durio zibethinus HOM05D000706 ORTHO05D001633 2.7e-08 62.4 61 39.3
A07p37590 Brassica napus HOM05D000706 ORTHO05D001554 4.5e-08 61.6 72 36.1
BraA07t31320Z Brassica rapa HOM05D000706 ORTHO05D001554 4.5e-08 61.6 72 36.1
Sp5g26430 Schrenkiella parvula HOM05D000706 ORTHO05D001554 4.5e-08 61.6 71 35.2
AT5G63700 Arabidopsis thaliana HOM05D000706 ORTHO05D001554 5.9e-08 61.2 71 35.2
C06p45350 Brassica napus HOM05D000706 ORTHO05D001554 5.9e-08 61.2 72 36.1
Lalb_Chr09g0321961 Lupinus albus HOM05D000706 ORTHO05D001633 5.9e-08 61.2 79 36.7
Nn5g29211 Nelumbo nucifera HOM05D000706 ORTHO05D001633 5.9e-08 61.2 62 41.9
BolC6t39591H Brassica oleracea HOM05D000706 ORTHO05D001554 7.7e-08 60.8 72 36.1
BcaC08g46559 Brassica carinata HOM05D000706 ORTHO05D001554 1.3e-07 60.1 72 34.7
Thhalv10003959m.g Eutrema salsugineum HOM05D000706 ORTHO05D001554 1.3e-07 60.1 65 35.4
Gohir.A08G223000 Gossypium hirsutum HOM05D000706 ORTHO05D001554 1.7e-07 59.7 71 36.6
Lsat_1_v5_gn_3_44121 Lactuca sativa HOM05D000706 ORTHO05D001633 1.7e-07 59.7 77 32.5
Gohir.D08G243300 Gossypium hirsutum HOM05D000706 ORTHO05D001554 2.3e-07 59.3 71 36.6
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 2.9e-07 58.9 65 35.4
MSTRG.2507 Avicennia marina HOM05D000706 ORTHO05D001633 2.9e-07 58.9 66 37.9
CARHR277620 Cardamine hirsuta HOM05D000706 ORTHO05D001554 2.9e-07 58.9 56 44.6
vmacro19842 Vaccinium macrocarpon HOM05D000706 ORTHO05D001554 2.9e-07 58.9 70 41.4
Gohir.A11G177900 Gossypium hirsutum HOM05D000706 ORTHO05D001633 3.8e-07 58.5 61 37.7
Gohir.D11G185700 Gossypium hirsutum HOM05D000706 ORTHO05D001633 5.0e-07 58.2 61 37.7
Gorai.007G197200 Gossypium raimondii HOM05D000706 ORTHO05D001633 5.0e-07 58.2 61 37.7
Lsat_1_v5_gn_8_128721 Lactuca sativa HOM05D000706 ORTHO05D001633 5.0e-07 58.2 63 36.5
Gohir.A02G169000 Gossypium hirsutum HOM05D000706 ORTHO05D001633 6.6e-07 57.8 61 37.7
Gorai.004G259200 Gossypium raimondii HOM05D000706 ORTHO05D001554 6.6e-07 57.8 71 35.2
Cc07_g19870 Coffea canephora HOM05D000706 ORTHO05D001554 1.1e-06 57.0 66 39.4
Lalb_Chr04g0262091 Lupinus albus HOM05D000706 ORTHO05D001554 1.1e-06 57.0 75 36.0
RcHm_v2.0_Chr6g0272291 Rosa chinensis HOM05D000706 ORTHO05D001554 1.1e-06 57.0 67 38.8
AL8G40850 Arabidopsis lyrata HOM05D000706 ORTHO05D001554 1.5e-06 56.6 71 32.4
Gohir.D03G011000 Gossypium hirsutum HOM05D000706 ORTHO05D001633 1.5e-06 56.6 61 36.1
Gorai.003G011400 Gossypium raimondii HOM05D000706 ORTHO05D001633 1.5e-06 56.6 61 36.1
FvH4_2g12310 Fragaria vesca HOM05D000706 ORTHO05D001554 2.5e-06 55.8 71 35.2
FAN24G2809 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.5e-06 55.8 71 35.2
FAN27G2281 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.5e-06 55.8 71 35.2
Lj1g0007134 Lotus japonicus HOM05D000706 ORTHO05D001554 2.5e-06 55.8 66 33.3
FAN20G1350 Fragaria x ananassa HOM05D000706 ORTHO05D001554 3.3e-06 55.5 71 35.2
Duzib187G0171 Durio zibethinus HOM05D000706 ORTHO05D001633 4.2e-06 55.1 61 36.1
Phvul.006G085511 Phaseolus vulgaris HOM05D000706 ORTHO05D001554 4.2e-06 55.1 70 40.0
Carub.0008s2447 Capsella rubella HOM05D000706 ORTHO05D001554 5.5e-06 54.7 46 41.3
ClCG05G000180 Citrullus lanatus HOM05D000706 ORTHO05D001554 5.5e-06 54.7 65 40.0
Duzib147G0672 Durio zibethinus HOM05D000706 ORTHO05D001633 5.5e-06 54.7 61 34.4
Ca_24896_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001633 7.2e-06 54.3 62 33.9
SEGI_33673 Sequoiadendron giganteum HOM05D000706 ORTHO05D001554 9.5e-06 53.9 50 46.0


User provided reference genes

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