Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0388461 Helianthus annuus HOM05D001200 ORTHO05D009713 5.0e-34 147.1 71 100.0
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 2.1e-19 98.6 47 95.7
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 2.1e-19 98.6 47 95.7
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BolSC29t60545H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BolSC35t60693H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BolSC44t60821H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-19 98.6 47 95.7
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-19 98.6 47 95.7
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-19 98.6 47 95.7
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-19 98.6 47 95.7
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-19 98.6 47 95.7
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-19 98.6 47 95.7
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-19 98.6 47 95.7
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 2.1e-19 98.6 47 95.7
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 2.1e-19 98.6 47 95.7
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 2.1e-19 98.6 47 95.7
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 2.1e-19 98.6 47 95.7
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.7e-19 98.2 47 93.6
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.7e-19 98.2 47 93.6
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.7e-19 98.2 47 93.6
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.7e-19 98.2 47 93.6
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.7e-19 98.2 47 93.6
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.7e-19 98.2 47 93.6
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.7e-19 98.2 47 93.6
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.7e-19 98.2 47 93.6
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 6.0e-19 97.1 47 93.6
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 7.8e-19 96.7 47 93.6
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 7.8e-19 96.7 47 93.6
TPR.G17259 Trifolium pratense HOM05D000404 ORTHO05D009713 7.8e-19 96.7 48 91.7
GSVIVG01034636001 Vitis vinifera HOM05D001200 ORTHO05D009713 1.0e-18 96.3 46 95.7
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 1.3e-18 95.9 47 91.5
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 2.3e-18 95.1 47 91.5
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 3.0e-18 94.7 49 85.7
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.9e-18 94.4 47 91.5
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 8.6e-18 93.2 47 89.4
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.1e-17 92.8 47 91.5
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.5e-17 91.7 47 87.2
HanXRQChr03g0073101 Helianthus annuus HOM05D001200 ORTHO05D002731 2.5e-17 91.7 47 91.5
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 2.5e-17 91.7 47 87.2
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 3.3e-17 91.3 49 87.8
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 4.3e-17 90.9 47 87.2
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 4.3e-17 90.9 46 89.1
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 9.5e-17 89.7 47 87.2
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 1.2e-16 89.4 44 93.2
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 1.2e-16 89.4 49 81.6
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 1.2e-16 89.4 49 83.7
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 4.7e-16 87.4 47 87.2
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 1.1e-15 86.3 39 97.4
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.8e-15 85.5 38 97.4
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 6.8e-15 83.6 45 82.2
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.2e-14 82.8 47 78.7
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 1.5e-14 82.4 38 92.1
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.5e-14 82.4 47 83.0
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 2.6e-14 81.6 37 94.6
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 2.6e-14 81.6 37 94.6
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 2.6e-14 81.6 37 94.6
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 5.8e-14 80.5 37 91.9
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 5.8e-14 80.5 56 71.4
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 2.2e-13 78.6 43 81.4
BolC2t10595H Brassica oleracea HOM05D001200 ORTHO05D009713 2.9e-13 78.2 38 89.5
Gohir.A05G291020 Gossypium hirsutum HOM05D001163 ORTHO05D001769 3.5e-11 71.2 33 93.9
Sed0012820 Sechium edule HOM05D001200 ORTHO05D009713 2.3e-10 68.6 33 90.9
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 2.5e-09 65.1 49 67.3
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 2.5e-09 65.1 49 67.3
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 3.3e-09 64.7 30 93.3
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 1.2e-08 62.8 49 67.3
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 1.2e-08 62.8 49 67.3
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 1.2e-08 62.8 49 67.3
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 1.2e-08 62.8 30 90.0
HanXRQChr08g0211961 Helianthus annuus HOM05D001200 ORTHO05D002731 3.6e-08 61.2 28 92.9
Medtr6g080310 Medicago truncatula HOM05D001200 ORTHO05D002731 9.9e-06 53.1 37 62.2


User provided reference genes

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