Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 2.4e-217 758.4 357 100.0
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 1.1e-156 557.0 343 77.3
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 6.2e-141 504.6 333 69.7
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 1.5e-139 500.0 338 70.4
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 2.6e-139 499.2 320 73.1
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 7.6e-139 497.7 322 72.4
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 1.7e-138 496.5 326 69.9
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 2.5e-137 492.7 341 68.0
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 9.3e-137 490.7 337 70.0
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 3.5e-136 488.8 414 60.1
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 6.0e-136 488.0 345 68.4
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 1.0e-135 487.3 414 59.7
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.8e-135 486.5 332 70.5
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 6.7e-135 484.6 341 66.6
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 3.7e-133 478.8 322 68.0
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 2.2e-130 469.5 347 64.3
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 1.4e-129 466.8 345 66.1
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 1.6e-128 463.4 341 64.2
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 2.1e-128 463.0 349 60.7
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 2.7e-128 462.6 345 64.9
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 2.7e-128 462.6 331 65.9
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 6.1e-128 461.5 337 66.2
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 1.8e-127 459.9 329 67.2
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 2.3e-127 459.5 351 61.8
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 3.0e-127 459.1 351 63.2
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 3.9e-127 458.8 349 63.6
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 5.1e-127 458.4 350 63.7
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 8.7e-127 457.6 343 64.1
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 1.5e-126 456.8 328 66.8
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 1.9e-126 456.4 360 61.4
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 3.3e-126 455.7 320 68.8
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 3.3e-126 455.7 323 65.3
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 5.7e-126 454.9 321 65.4
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 9.7e-126 454.1 321 66.7
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.3e-125 453.8 363 62.0
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.6e-125 453.4 324 67.3
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 1.6e-125 453.4 324 67.3
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 1.6e-125 453.4 341 62.8
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 1.6e-125 453.4 342 64.0
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.4e-124 450.3 324 67.0
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 5.3e-124 448.4 354 61.9
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 5.3e-124 448.4 321 67.0
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 6.9e-124 448.0 343 62.4
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 9.1e-124 447.6 320 64.7
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 9.1e-124 447.6 326 63.8
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.2e-123 447.2 320 64.7
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 1.2e-123 447.2 336 65.8
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 3.4e-123 445.7 319 65.5
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 4.5e-123 445.3 321 66.7
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 4.5e-123 445.3 357 61.6
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 7.7e-123 444.5 350 62.3
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 7.7e-123 444.5 350 62.3
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 1.7e-122 443.4 334 63.8
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 1.7e-122 443.4 327 63.6
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 5.0e-122 441.8 350 60.0
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 8.5e-122 441.0 326 64.1
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 1.1e-121 440.7 351 61.0
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 1.1e-121 440.7 324 64.8
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 1.1e-121 440.7 350 60.9
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 3.2e-121 439.1 351 61.0
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 4.2e-121 438.7 347 61.1
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 4.2e-121 438.7 349 61.0
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 7.2e-121 438.0 329 63.8
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 9.4e-121 437.6 324 62.7
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 1.6e-120 436.8 363 58.7
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 3.6e-120 435.6 351 59.0
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 3.6e-120 435.6 356 59.3
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 4.6e-120 435.3 356 59.0
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 4.6e-120 435.3 396 55.3
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 3.9e-119 432.2 349 60.2
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 8.8e-119 431.0 325 62.8
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 8.8e-119 431.0 323 63.5
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 9.7e-118 427.6 331 61.0
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 6.3e-117 424.9 323 62.2
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 5.9e-115 418.3 309 62.8
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 5.5e-113 411.8 351 57.0
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 8.8e-111 404.4 319 59.6
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 8.8e-111 404.4 319 59.6
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 1.7e-109 400.2 327 58.7
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 6.3e-109 398.3 307 61.2
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 4.1e-108 395.6 353 54.4
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 2.0e-102 376.7 333 57.7
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 3.7e-101 372.5 340 57.9
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 2.4e-100 369.8 281 64.1
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 9.1e-100 367.9 278 62.6
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 2.9e-98 362.8 276 61.2
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 6.5e-98 361.7 281 60.9
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 8.5e-98 361.3 278 61.2
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 5.5e-97 358.6 342 53.2
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 4.8e-93 345.5 270 63.0
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 1.0e-87 327.8 280 56.8
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 1.8e-87 327.0 340 50.6
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 1.8e-76 290.4 259 55.2
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 3.9e-66 256.1 156 72.4
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 1.7e-61 240.7 159 67.9
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 3.4e-54 216.5 119 76.5
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 5.8e-54 215.7 127 75.6
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 3.6e-48 196.4 344 37.2
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 2.4e-47 193.7 278 41.4
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 4.0e-47 193.0 275 42.2
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 3.4e-46 189.9 188 52.7
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 5.4e-44 182.6 129 65.1
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 3.6e-40 169.9 307 35.5
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 1.1e-33 148.3 92 73.9
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 8.1e-32 142.1 297 32.0
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 3.3e-25 120.2 242 33.1
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 8.2e-16 89.0 68 64.7
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.4e-15 88.2 80 56.2
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 3.1e-15 87.0 59 67.8
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 4.5e-14 83.2 40 85.0
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 1.7e-13 81.3 117 43.6
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 9.3e-12 75.5 55 63.6
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 1.8e-10 71.2 147 30.6
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 1.8e-10 71.2 147 30.6
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 1.8e-10 71.2 142 31.7
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 3.9e-10 70.1 142 31.7
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 8.8e-10 68.9 143 30.8
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 1.1e-09 68.6 147 29.9
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 1.1e-09 68.6 99 38.4
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 1.9e-09 67.8 189 31.2
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.9e-09 67.8 142 30.3
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 3.3e-09 67.0 142 30.3
Peaxi162Scf00259g00051 Petunia axillaris HOM05D004978 ORTHO05D005621 3.3e-09 67.0 163 29.4
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 4.3e-09 66.6 147 29.9
EL10Ac5g10492 Beta vulgaris HOM05D004978 ORTHO05D005621 1.3e-08 65.1 142 31.0
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 2.8e-08 63.9 91 41.8
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 6.3e-08 62.8 272 24.6
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 1.4e-07 61.6 275 23.6
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 2.4e-07 60.8 273 24.9
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 3.1e-07 60.5 142 31.0
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 3.1e-07 60.5 276 24.3
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 5.3e-07 59.7 273 22.7
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 5.3e-07 59.7 278 23.4
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 6.9e-07 59.3 281 23.1
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 9.1e-07 58.9 304 23.4
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 2.6e-06 57.4 282 23.4
PRCOL_00006664 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 3.4e-06 57.0 289 24.2
MCO05G292 Micromonas commoda HOM05D004419 ORTHO05D005480 5.9e-06 56.2 138 27.5
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 7.7e-06 55.8 273 22.0
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 7.7e-06 55.8 274 20.4


User provided reference genes

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