Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 0.0e+00 2103.2 1050 100.0
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 5.5e-262 908.3 955 55.5
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 1.8e-260 903.3 1208 44.5
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 2.6e-256 889.4 1314 41.6
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 5.0e-255 885.2 1260 43.1
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 2.5e-254 882.9 1131 46.3
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 3.0e-252 875.9 1311 42.0
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.7e-250 870.2 1183 43.6
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.8e-250 869.4 1234 42.2
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 5.3e-249 865.1 1256 43.6
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 7.7e-248 861.3 1256 42.2
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 1.0e-247 860.9 1221 42.5
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 4.7e-245 852.0 1221 42.2
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 6.8e-244 848.2 1255 42.6
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.2e-243 847.4 1282 42.3
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 2.0e-243 846.7 1255 42.6
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 9.8e-243 844.3 1240 41.9
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 3.7e-242 842.4 1306 40.7
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 1.8e-241 840.1 1246 41.7
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 7.0e-241 838.2 1268 41.2
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 2.0e-240 836.6 1327 38.9
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 2.7e-240 836.3 1264 42.3
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.0e-239 834.3 1257 41.8
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.0e-239 834.3 1266 42.1
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 1.3e-239 833.9 1233 41.7
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 2.3e-239 833.2 1235 41.4
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 8.6e-239 831.2 1246 41.4
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 1.9e-238 830.1 1256 41.2
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 9.5e-238 827.8 1206 41.8
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 3.6e-237 825.9 830 55.3
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 4.7e-237 825.5 1242 42.1
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 6.1e-237 825.1 1232 41.2
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 4.0e-236 822.4 1221 42.1
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 1.2e-235 820.8 1242 41.6
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 2.6e-235 819.7 968 49.5
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 5.7e-235 818.5 1239 40.9
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 4.9e-234 815.5 1234 41.7
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 6.6e-231 805.1 1309 39.2
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 3.6e-229 799.3 1254 40.4
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 8.0e-229 798.1 1222 40.8
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 3.2e-225 786.2 1225 39.6
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 1.2e-224 784.3 1236 39.5
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 1.5e-219 767.3 1257 40.0
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 6.4e-218 761.9 1268 38.0
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 1.7e-210 737.3 1211 39.9
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.4e-209 734.2 1207 39.8
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 7.1e-209 731.9 1280 36.8
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 2.7e-208 729.9 1196 39.9
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 2.8e-205 719.9 1215 38.7
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 6.8e-204 715.3 1246 37.6
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 9.9e-203 711.4 1242 36.9
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 7.1e-201 705.3 1230 38.5
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 1.5e-198 697.6 1187 39.0
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 2.5e-198 696.8 931 45.1
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 5.6e-198 695.7 1445 34.3
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 1.3e-197 694.5 1157 38.5
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 2.1e-197 693.7 1157 38.6
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 3.6e-197 693.0 951 42.5
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 6.9e-196 688.7 1167 39.0
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 6.9e-196 688.7 1157 38.5
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 3.4e-195 686.4 1154 38.2
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 3.4e-195 686.4 1161 38.0
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 3.2e-193 679.9 1060 40.8
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 9.3e-193 678.3 1133 39.9
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 7.3e-190 668.7 1161 37.5
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 9.6e-190 668.3 1166 37.5
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 2.8e-189 666.8 1232 36.9
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 1.1e-188 664.8 1166 37.3
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 2.1e-184 650.6 1167 35.6
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 2.1e-181 640.6 727 48.7
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 2.3e-175 620.5 813 44.4
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 5.1e-175 619.4 1104 37.8
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 5.8e-171 605.9 825 43.6
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 1.4e-161 574.7 1002 38.6
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 7.2e-161 572.4 1084 36.4
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 7.9e-160 568.9 834 41.1
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 5.7e-150 536.2 1406 29.3
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 8.8e-143 512.3 740 41.1
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 6.5e-138 496.1 859 37.7
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 7.7e-131 472.6 877 35.7
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 6.2e-112 409.8 756 35.7
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 1.3e-109 402.1 1269 27.7
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 2.9e-109 401.0 882 32.1
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 4.0e-103 380.6 749 32.4
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 3.4e-102 377.5 351 55.3
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 1.7e-98 365.2 360 53.3
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 1.6e-96 358.6 381 49.1
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 1.8e-95 355.1 369 51.8
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 1.2e-91 342.4 876 31.4
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 2.9e-85 321.2 844 30.6
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 2.3e-82 311.6 278 57.9
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 5.1e-82 310.5 361 46.0
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 4.3e-73 280.8 475 38.1
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 1.2e-70 272.7 373 41.8
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 2.1e-67 261.9 275 49.8
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 3.7e-56 224.6 904 24.2
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 6.9e-55 220.3 443 34.8
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.4e-54 218.0 343 38.5
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.4e-54 218.0 343 38.5
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 4.5e-54 217.6 185 60.5
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 5.0e-53 214.2 446 35.7
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 9.7e-49 199.9 196 53.6
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 6.3e-48 197.2 273 45.8
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.1e-47 194.9 463 29.2
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.5e-46 192.6 553 26.2
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 1.9e-44 185.7 251 42.6
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 1.2e-43 183.0 188 52.1
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 1.6e-43 182.6 238 40.3
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 3.9e-42 177.9 182 52.7
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 2.9e-37 161.8 264 40.5
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.3e-34 152.1 230 36.1
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 4.4e-33 147.9 256 38.7
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 5.7e-33 147.5 307 37.8
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 1.6e-30 139.4 181 44.8
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 1.5e-28 132.9 149 49.7
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 2.6e-25 122.1 192 38.5
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 2.2e-24 119.0 184 40.2
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 1.9e-20 105.9 338 25.4
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 1.7e-16 92.8 322 27.6
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.3e-13 83.2 94 43.6
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 6.5e-13 80.9 83 45.8
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 8.5e-13 80.5 132 34.1
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.2e-11 76.6 143 30.8
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.1e-11 75.9 80 52.5
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 2.1e-11 75.9 340 24.7
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 5.2e-10 71.2 80 51.2
BcaB02g11432 Brassica carinata HOM05D020491 ORTHO05D006352 1.5e-09 69.7 101 41.6
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 1.5e-09 69.7 86 50.0
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.0e-09 69.3 80 50.0
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 1.7e-08 66.2 111 37.8
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.1e-07 63.5 67 47.8
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 1.8e-07 62.8 95 41.1
DCAR_005448 Daucus carota HOM05D005395 ORTHO05D006352 2.4e-07 62.4 95 41.1
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 7.0e-07 60.8 115 33.0
BcaC01g02118 Brassica carinata HOM05D014762 ORTHO05D023916 2.0e-06 59.3 51 56.9
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 3.5e-06 58.5 60 45.0


User provided reference genes

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