Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 7.6e-236 820.1 402 100.0
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 7.9e-193 677.2 402 80.8
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 2.8e-182 642.1 414 78.3
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 1.9e-162 576.2 408 69.9
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.2e-161 573.5 402 71.6
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.2e-161 573.5 405 69.9
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 1.6e-161 573.2 405 69.6
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 6.1e-161 571.2 397 70.0
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 9.8e-159 563.9 405 69.1
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 2.2e-158 562.8 405 66.2
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 3.7e-158 562.0 405 68.6
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.8e-158 561.6 407 68.8
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 6.3e-158 561.2 402 68.4
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 6.3e-158 561.2 407 68.8
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 3.1e-157 558.9 406 67.5
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 5.4e-157 558.1 402 68.7
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 5.4e-157 558.1 405 67.2
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 9.1e-157 557.4 405 67.9
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 9.1e-157 557.4 404 67.6
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 9.1e-157 557.4 447 63.1
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 1.6e-156 556.6 402 69.4
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.6e-156 556.6 405 68.1
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 2.0e-156 556.2 406 66.3
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 7.7e-156 554.3 405 66.9
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 2.2e-155 552.7 402 68.9
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 3.8e-155 552.0 403 68.0
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 5.0e-155 551.6 408 67.4
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 6.5e-155 551.2 410 66.1
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 6.5e-155 551.2 405 66.7
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.1e-154 550.4 402 68.7
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.2e-154 548.9 407 67.8
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 4.2e-154 548.5 402 67.4
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 2.7e-153 545.8 408 67.9
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 6.1e-153 544.7 403 65.5
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 8.0e-153 544.3 405 65.7
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 1.0e-152 543.9 406 65.5
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.4e-152 543.5 402 66.7
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 1.8e-152 543.1 406 64.3
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.8e-152 543.1 406 64.0
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.8e-152 543.1 404 67.3
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 6.8e-152 541.2 405 65.2
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 3.4e-151 538.9 407 67.6
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 3.4e-151 538.9 407 65.8
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.4e-151 538.5 448 61.2
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 1.3e-150 537.0 405 65.7
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 2.8e-150 535.8 417 65.2
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 3.7e-150 535.4 409 65.0
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 3.7e-150 535.4 407 64.6
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.4e-149 533.5 411 65.5
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.8e-149 533.1 404 65.3
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 5.4e-149 531.6 411 64.2
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.6e-148 530.0 420 64.0
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 1.6e-148 530.0 406 64.8
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 2.7e-148 529.3 406 65.5
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 1.7e-147 526.6 408 65.4
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 1.7e-147 526.6 405 63.2
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.1e-146 523.9 405 62.2
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 1.9e-146 523.1 404 62.9
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 3.3e-146 522.3 405 63.2
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 3.3e-146 522.3 405 63.2
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 4.3e-146 521.9 404 64.4
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 7.3e-146 521.2 409 64.3
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 9.5e-146 520.8 396 64.4
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.2e-145 520.4 405 63.2
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 1.6e-145 520.0 406 62.1
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.6e-145 520.0 404 62.9
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 2.1e-145 519.6 406 62.1
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 4.7e-145 518.5 405 62.7
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 4.7e-145 518.5 398 63.3
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 6.1e-145 518.1 404 63.4
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.4e-144 516.9 407 62.9
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.4e-144 516.9 407 62.9
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 4.0e-144 515.4 405 63.0
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.2e-143 513.8 405 63.5
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 1.2e-143 513.8 405 62.2
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 4.4e-143 511.9 428 61.0
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.2e-141 505.8 394 62.7
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.4e-141 505.0 410 63.4
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 5.9e-140 501.5 403 62.5
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 7.8e-140 501.1 427 59.3
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 5.0e-139 498.4 364 68.1
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 1.6e-137 493.4 411 58.6
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 2.1e-137 493.0 484 55.4
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 2.1e-137 493.0 365 66.8
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 1.4e-136 490.3 404 60.4
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.8e-136 490.0 390 63.6
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.0e-135 486.5 437 58.8
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.0e-135 486.5 437 58.8
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.6e-135 486.1 401 60.8
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 6.4e-134 481.5 398 61.6
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 3.2e-133 479.2 400 61.0
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.2e-132 477.2 398 61.1
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 7.8e-132 474.6 406 58.4
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 1.3e-131 473.8 345 66.4
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 2.3e-131 473.0 407 60.0
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.5e-130 470.3 406 58.1
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 2.5e-130 469.5 387 61.2
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 6.4e-126 454.9 399 56.4
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 9.2e-125 451.1 399 57.4
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.0e-123 447.6 403 56.3
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 6.6e-123 444.9 401 58.1
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 1.5e-122 443.7 399 56.9
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 1.2e-121 440.7 333 64.0
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 8.1e-121 438.0 399 56.6
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 9.9e-119 431.0 398 55.0
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.1e-117 427.6 398 54.8
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.2e-117 426.0 399 56.4
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 5.4e-117 425.2 383 56.1
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.2e-116 424.1 394 56.3
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.7e-115 420.2 365 58.9
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 1.7e-115 420.2 401 54.9
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 3.9e-115 419.1 402 54.2
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.5e-114 416.4 318 64.2
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 7.3e-114 414.8 400 54.8
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 1.8e-112 410.2 329 61.4
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 5.2e-112 408.7 390 54.9
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 8.9e-112 407.9 399 53.6
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.8e-111 405.2 399 53.4
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 4.2e-109 399.1 383 53.3
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.0e-107 394.4 359 55.4
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 9.6e-106 387.9 402 51.7
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 4.0e-104 382.5 399 51.6
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 9.0e-104 381.3 252 71.4
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 4.5e-103 379.0 399 50.6
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 2.2e-102 376.7 321 58.6
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 6.4e-102 375.2 399 50.1
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 3.2e-101 372.9 394 50.3
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.2e-100 370.9 407 51.8
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 2.1e-100 370.2 390 50.5
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 2.1e-100 370.2 390 50.5
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 4.6e-100 369.0 390 50.3
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 1.1e-98 364.4 358 53.6
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 4.5e-95 352.4 260 68.8
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 5.8e-95 352.1 272 60.7
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 5.8e-95 352.1 393 48.3
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.9e-95 351.3 263 66.5
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 7.1e-93 345.1 339 54.6
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 4.6e-92 342.4 340 52.4
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.1e-90 337.8 273 62.3
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 1.9e-90 337.0 397 44.3
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.2e-86 323.6 232 67.2
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.3e-85 318.2 260 60.0
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 9.3e-85 318.2 252 62.3
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 3.5e-84 316.2 400 42.8
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 1.4e-80 304.3 409 42.5
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.5e-79 300.8 396 43.7
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.6e-76 289.3 268 56.0
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 8.5e-70 268.5 300 50.0
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.6e-68 264.2 364 42.9
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.3e-65 254.6 194 65.5
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 9.4e-61 238.4 156 70.5
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 4.7e-60 236.1 445 35.1
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 2.0e-42 177.6 446 29.4
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 8.3e-41 172.2 362 33.1
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 1.6e-39 167.9 129 69.8
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 3.5e-39 166.8 137 64.2
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 4.5e-39 166.4 128 68.0
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 2.0e-34 151.0 111 65.8
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.4e-32 144.8 126 61.9
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 7.0e-32 142.5 383 30.3
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 8.6e-30 135.6 317 28.7
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 8.0e-28 129.0 301 32.2
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 1.2e-26 125.2 301 31.9
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 6.6e-22 109.4 122 47.5
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 2.1e-20 104.4 68 73.5
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 4.9e-17 93.2 89 55.1
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.0e-14 83.2 64 60.9
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.9e-13 81.3 111 44.1
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.3e-13 80.1 68 58.8
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 1.3e-09 68.6 44 79.5
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 4.9e-09 66.6 62 58.1
HanXRQChr01g0029221 Helianthus annuus HOM05D003933 ORTHO05D227176 1.9e-08 64.7 44 77.3
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 8.6e-06 55.8 35 68.6


User provided reference genes

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