Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 5.5e-147 524.2 257 100.0
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 1.7e-92 343.2 226 74.3
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 1.1e-83 313.9 176 83.0
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 3.5e-69 265.8 232 56.9
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 1.1e-67 260.8 231 58.0
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 2.5e-67 259.6 244 54.1
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 1.6e-66 256.9 204 61.8
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.1e-66 256.5 231 54.1
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 4.0e-65 252.3 192 63.0
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 6.9e-65 251.5 225 55.6
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.8e-63 245.7 181 61.3
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 1.1e-62 244.2 232 50.9
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 1.1e-62 244.2 220 54.1
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 1.4e-62 243.8 174 63.8
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 3.2e-62 242.7 216 56.9
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 3.2e-62 242.7 221 56.1
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 5.4e-62 241.9 204 59.3
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 7.1e-62 241.5 188 61.2
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 7.1e-62 241.5 221 53.8
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 9.3e-62 241.1 181 61.3
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 9.3e-62 241.1 181 61.3
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 1.2e-61 240.7 221 57.0
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 1.2e-61 240.7 178 62.4
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 1.6e-61 240.4 231 55.0
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 2.1e-61 240.0 210 56.2
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 2.1e-61 240.0 204 58.8
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 2.7e-61 239.6 174 64.4
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 2.7e-61 239.6 237 53.6
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 4.6e-61 238.8 219 55.7
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 6.0e-61 238.4 221 53.4
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 1.3e-60 237.3 176 62.5
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 1.3e-60 237.3 190 59.5
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.7e-60 236.9 181 60.2
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 3.9e-60 235.7 238 53.8
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 3.9e-60 235.7 179 59.8
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 5.1e-60 235.3 173 64.7
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 6.6e-60 235.0 174 62.1
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.1e-59 234.2 225 53.3
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.5e-59 233.8 170 62.9
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 1.5e-59 233.8 204 58.3
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 2.5e-59 233.0 239 49.8
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 3.3e-59 232.6 187 57.8
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 3.3e-59 232.6 174 61.5
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 4.3e-59 232.3 215 54.4
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 5.6e-59 231.9 234 52.1
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 5.6e-59 231.9 174 61.5
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 7.3e-59 231.5 236 47.5
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 7.3e-59 231.5 227 51.5
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 9.6e-59 231.1 239 50.6
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 1.3e-58 230.7 205 56.1
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 1.6e-58 230.3 186 57.0
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 2.8e-58 229.6 188 58.5
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 3.6e-58 229.2 185 56.2
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 4.8e-58 228.8 236 48.3
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 4.8e-58 228.8 169 63.9
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 1.4e-57 227.3 237 51.9
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 1.8e-57 226.9 172 62.2
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 2.4e-57 226.5 172 61.6
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 2.4e-57 226.5 172 61.6
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 4.0e-57 225.7 175 57.7
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 6.9e-57 224.9 193 56.0
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 9.0e-57 224.6 237 47.7
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.2e-56 224.2 169 56.8
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.2e-56 224.2 169 56.8
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 2.6e-56 223.0 216 53.2
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 3.4e-56 222.6 180 53.9
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 9.9e-56 221.1 166 57.2
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.3e-55 220.7 176 52.8
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 2.2e-55 219.9 239 46.9
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 4.9e-55 218.8 169 56.2
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 4.9e-55 218.8 169 56.2
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 2.4e-54 216.5 220 46.8
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 2.4e-54 216.5 242 45.0
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 3.2e-54 216.1 169 55.6
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 9.3e-54 214.5 204 47.5
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 2.1e-53 213.4 228 46.5
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 3.5e-53 212.6 179 54.2
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 3.0e-52 209.5 157 62.4
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 6.7e-52 208.4 233 45.1
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 8.7e-52 208.0 175 50.9
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 8.7e-52 208.0 200 48.5
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 4.3e-51 205.7 156 60.9
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 7.4e-51 204.9 183 49.7
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 6.2e-50 201.8 167 55.7
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 8.1e-50 201.4 226 47.3
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 8.1e-50 201.4 169 53.8
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 1.4e-49 200.7 169 53.8
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 3.1e-49 199.5 175 50.3
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.9e-46 190.3 176 54.0
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 8.7e-44 181.4 193 46.6
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.0e-40 170.2 206 47.6
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 7.1e-38 161.8 161 53.4
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.1e-33 147.9 220 35.5
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 3.4e-32 142.9 181 47.0
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 8.5e-31 138.3 135 54.8
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 1.1e-30 137.9 119 54.6
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 1.4e-30 137.5 159 50.3
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 1.3e-28 131.0 136 49.3
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 2.2e-26 123.6 133 39.1
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 4.2e-22 109.4 195 31.8
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.0e-20 103.2 80 52.5
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.3e-19 99.8 80 52.5
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 4.4e-19 99.4 174 33.9
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 5.9e-16 89.0 57 68.4
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 7.7e-16 88.6 170 32.9
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 8.5e-15 85.1 136 30.1
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 1.1e-14 84.7 220 29.1
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 3.2e-14 83.2 166 33.1
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 2.7e-13 80.1 83 44.6
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 3.9e-12 76.3 223 25.1
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 3.9e-12 76.3 110 38.2
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 5.7e-11 72.4 148 29.7
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 7.4e-11 72.0 149 29.5
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 9.7e-11 71.6 149 29.5
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 1.3e-10 71.2 62 53.2
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 2.8e-10 70.1 142 28.2
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 3.7e-10 69.7 214 25.2
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 4.8e-10 69.3 110 40.0
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.8e-09 67.4 35 77.1
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 2.0e-08 63.9 187 25.1
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 2.0e-08 63.9 140 30.7
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 4.5e-08 62.8 152 25.0
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 4.5e-08 62.8 140 30.7
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.3e-07 61.2 134 23.1
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.1e-06 58.2 114 39.5
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.1e-06 58.2 85 29.4


User provided reference genes

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