Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 2.5e-181 638.6 327 100.0
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 2.6e-154 548.9 322 85.7
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 3.7e-148 528.5 326 79.8
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 3.6e-127 458.8 329 70.2
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 1.8e-126 456.4 325 70.5
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 9.2e-123 444.1 327 65.4
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 2.7e-122 442.6 327 67.3
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 9.5e-120 434.1 325 64.0
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.2e-119 433.7 327 66.1
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.6e-119 433.3 327 67.6
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.8e-119 432.6 327 67.0
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 3.6e-119 432.2 343 63.6
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 4.7e-119 431.8 325 65.8
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 6.1e-119 431.4 322 68.3
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.4e-118 430.3 327 66.4
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 1.4e-118 430.3 324 67.0
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 1.8e-118 429.9 362 60.5
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 1.8e-118 429.9 325 66.2
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 2.3e-118 429.5 327 66.1
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.3e-118 429.5 327 67.0
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 2.3e-118 429.5 325 64.6
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 5.2e-118 428.3 327 64.2
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 6.8e-118 427.9 327 66.7
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 8.9e-118 427.6 327 66.4
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 8.9e-118 427.6 327 66.7
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 1.5e-117 426.8 327 65.7
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.5e-117 426.8 325 65.5
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 2.0e-117 426.4 327 66.1
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.0e-117 426.4 327 66.1
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 4.4e-117 425.2 327 65.4
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 5.8e-117 424.9 327 65.7
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 5.8e-117 424.9 327 65.7
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 5.8e-117 424.9 328 64.6
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 5.8e-117 424.9 328 64.6
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 7.5e-117 424.5 322 65.5
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 1.3e-116 423.7 322 67.7
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 1.3e-116 423.7 322 65.8
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.7e-116 423.3 327 63.6
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 2.9e-116 422.5 327 64.8
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 6.4e-116 421.4 324 65.7
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 1.1e-115 420.6 325 64.9
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 1.1e-115 420.6 327 64.2
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 1.1e-115 420.6 325 64.9
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.1e-115 420.6 327 64.2
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 2.4e-115 419.5 325 65.5
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 3.2e-115 419.1 327 63.9
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.2e-115 419.1 320 65.0
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 3.2e-115 419.1 325 64.9
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 4.1e-115 418.7 324 65.4
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 7.0e-115 417.9 301 69.4
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 9.2e-115 417.5 318 63.5
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 2.0e-114 416.4 327 64.8
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 2.0e-114 416.4 324 63.6
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 4.6e-114 415.2 325 64.3
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 6.0e-114 414.8 316 62.3
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 6.0e-114 414.8 328 64.3
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.3e-113 413.7 324 63.0
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.7e-113 413.3 360 58.6
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 3.9e-113 412.1 364 58.2
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 5.0e-113 411.8 328 63.1
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 6.6e-113 411.4 325 63.7
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 6.6e-113 411.4 320 63.8
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 8.6e-113 411.0 324 61.7
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 8.6e-113 411.0 327 62.4
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 8.6e-113 411.0 320 63.4
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.5e-112 410.2 328 62.8
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 2.5e-112 409.5 324 63.0
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 3.3e-112 409.1 326 63.2
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 4.3e-112 408.7 310 65.8
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 6.2e-111 404.8 320 62.2
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 6.8e-110 401.4 320 62.5
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 2.6e-109 399.4 326 60.4
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.8e-109 398.3 327 61.8
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 6.4e-108 394.8 322 59.9
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 6.4e-108 394.8 319 61.4
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 8.3e-108 394.4 380 55.3
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 1.1e-107 394.0 326 60.7
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 3.2e-107 392.5 329 62.6
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 2.1e-106 389.8 320 60.6
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 2.7e-106 389.4 292 65.4
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.7e-105 386.7 341 60.7
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.5e-104 383.6 341 60.1
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 3.3e-104 382.5 370 53.8
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 5.2e-102 375.2 325 61.2
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.7e-100 370.2 316 58.5
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 1.1e-99 367.5 349 56.2
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 9.2e-99 364.4 292 65.1
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 3.9e-97 359.0 259 66.0
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 2.5e-96 356.3 329 56.2
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 4.3e-96 355.5 327 56.9
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 5.6e-96 355.1 326 57.4
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 3.6e-95 352.4 328 55.5
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 2.2e-92 343.2 324 55.6
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 3.8e-92 342.4 325 56.6
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 1.1e-91 340.9 231 70.6
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.2e-90 337.4 275 62.9
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 6.2e-87 325.1 326 52.8
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 3.4e-85 319.3 255 64.3
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 2.9e-84 316.2 263 62.7
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 2.9e-84 316.2 244 66.4
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 4.9e-84 315.5 294 56.1
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 6.4e-84 315.1 336 52.7
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 3.1e-78 296.2 327 47.7
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 6.9e-78 295.0 186 72.6
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 1.7e-76 290.4 316 48.4
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 5.4e-75 285.4 183 72.1
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.7e-74 283.1 220 62.3
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.3e-73 280.8 217 62.7
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 7.4e-72 275.0 336 43.8
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 2.4e-70 270.0 328 45.1
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.2e-69 267.7 331 44.4
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 5.1e-65 252.3 327 41.6
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 3.7e-63 246.1 162 69.1
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 8.7e-57 224.9 326 43.6
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 9.4e-51 204.9 170 60.6
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.1e-48 198.0 156 60.3
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 7.7e-45 185.3 118 69.5
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 5.1e-41 172.6 165 55.2
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 8.8e-41 171.8 323 36.2
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 8.2e-39 165.2 192 42.7
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 2.0e-37 160.6 351 30.8
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 1.4e-33 147.9 195 50.3
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 1.1e-30 138.3 316 32.9
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 5.3e-30 136.0 144 54.9
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.9e-27 127.5 348 31.0
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 7.2e-27 125.6 153 47.1
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.2e-21 108.2 137 47.4
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 5.7e-16 89.4 59 72.9
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.6e-13 81.3 59 55.9
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 1.9e-11 74.3 239 26.8
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.0e-09 68.6 72 50.0
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 2.0e-08 64.3 66 45.5
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 2.6e-08 63.9 45 57.8
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 1.7e-07 61.2 48 62.5
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 7.0e-06 55.8 84 42.9


User provided reference genes

Program Settings