Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 7.5e-107 390.6 204 100.0
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.4e-73 280.0 185 78.4
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.7e-72 275.8 185 82.7
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.2e-59 233.8 179 67.0
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 7.6e-59 231.1 178 68.5
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.7e-58 229.9 167 70.7
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 4.9e-58 228.4 171 69.0
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 4.9e-58 228.4 172 69.2
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 6.4e-58 228.0 174 67.8
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 8.4e-58 227.6 183 67.2
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.1e-57 227.3 178 67.4
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 2.4e-57 226.1 189 64.0
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 3.2e-57 225.7 171 69.0
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 5.5e-57 224.9 180 66.1
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 7.1e-57 224.6 182 64.8
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 2.7e-56 222.6 175 67.4
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 6.0e-56 221.5 174 66.7
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.0e-55 220.7 174 64.4
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.0e-55 220.7 195 61.0
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.3e-55 220.3 172 67.4
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 3.0e-55 219.2 174 67.8
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 3.9e-55 218.8 174 64.9
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.9e-55 218.8 172 69.2
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 5.1e-55 218.4 178 65.2
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 1.1e-54 217.2 177 63.3
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 1.1e-54 217.2 205 59.0
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.1e-54 217.2 176 64.2
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.9e-54 216.5 164 69.5
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 1.9e-54 216.5 178 64.6
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 2.5e-54 216.1 171 65.5
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 3.3e-54 215.7 172 66.9
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 3.3e-54 215.7 175 65.1
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 3.3e-54 215.7 180 63.9
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 3.3e-54 215.7 172 64.5
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 4.3e-54 215.3 173 65.3
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 7.4e-54 214.5 172 66.3
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 7.4e-54 214.5 174 64.9
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 9.6e-54 214.2 186 59.7
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 1.3e-53 213.8 178 63.5
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 1.3e-53 213.8 175 64.0
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-53 213.8 175 64.0
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.3e-53 213.8 175 65.1
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 1.3e-53 213.8 171 66.7
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.3e-53 213.8 177 63.3
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.3e-53 213.8 171 64.9
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.3e-53 213.8 176 63.6
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.6e-53 213.4 176 63.1
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 2.1e-53 213.0 174 65.5
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 2.8e-53 212.6 172 63.4
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 4.8e-53 211.8 176 61.9
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 6.2e-53 211.5 189 61.4
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 6.2e-53 211.5 161 67.7
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 6.2e-53 211.5 172 64.0
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 8.1e-53 211.1 174 64.4
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 8.1e-53 211.1 174 60.9
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.1e-52 210.7 175 63.4
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.1e-52 210.7 175 63.4
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.1e-52 210.7 175 62.9
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.1e-52 210.7 173 65.3
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.1e-52 210.7 171 63.7
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.1e-52 210.7 175 64.0
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.4e-52 210.3 178 61.8
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.8e-52 209.9 175 62.3
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.8e-52 209.9 175 64.0
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 2.4e-52 209.5 175 63.4
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 2.4e-52 209.5 178 61.8
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.4e-52 209.5 195 59.0
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 2.4e-52 209.5 171 64.3
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.4e-52 209.5 181 62.4
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 3.1e-52 209.1 175 62.9
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 3.1e-52 209.1 175 61.7
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 3.1e-52 209.1 170 67.1
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 4.0e-52 208.8 176 63.6
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.0e-52 208.8 194 57.7
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.0e-52 208.8 175 63.4
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 4.0e-52 208.8 178 61.2
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 5.3e-52 208.4 172 62.8
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 6.9e-52 208.0 163 65.6
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 6.9e-52 208.0 171 66.1
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 9.0e-52 207.6 175 62.9
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.2e-51 207.2 175 62.9
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.2e-51 207.2 175 62.9
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.5e-51 206.8 171 62.0
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 3.4e-51 205.7 187 58.8
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 3.4e-51 205.7 158 65.8
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 4.5e-51 205.3 173 65.3
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 5.8e-51 204.9 187 58.8
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 7.6e-51 204.5 175 62.3
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.0e-50 204.1 153 66.7
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.3e-50 203.8 171 62.6
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.3e-50 203.8 152 66.4
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.7e-50 203.4 153 68.0
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.7e-50 203.4 153 68.0
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 2.2e-50 203.0 154 66.9
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.2e-50 203.0 153 67.3
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 4.9e-50 201.8 159 66.0
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 6.5e-50 201.4 189 58.2
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 8.4e-50 201.1 172 62.8
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.1e-49 200.7 176 61.4
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.5e-49 199.5 207 54.6
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 2.5e-49 199.5 171 60.2
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 2.5e-49 199.5 171 60.2
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 2.5e-49 199.5 171 60.2
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 3.2e-49 199.1 171 60.2
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 3.2e-49 199.1 171 60.2
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 7.1e-49 198.0 163 64.4
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 9.3e-49 197.6 178 59.6
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.6e-48 196.8 172 58.7
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 2.7e-48 196.1 168 63.7
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 4.6e-48 195.3 158 61.4
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 6.0e-48 194.9 171 57.9
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 7.9e-48 194.5 186 56.5
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 3.0e-47 192.6 251 49.0
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.0e-47 192.6 174 55.2
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.0e-47 192.6 158 66.5
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.9e-47 192.2 176 60.8
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 3.9e-47 192.2 204 53.9
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 3.9e-47 192.2 176 55.7
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 5.1e-47 191.8 198 56.1
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 5.1e-47 191.8 156 66.0
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 3.3e-46 189.1 161 64.6
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.3e-45 187.2 174 55.2
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 2.8e-45 186.0 125 72.0
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 3.7e-45 185.7 171 56.1
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 2.4e-44 183.0 160 63.8
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 5.3e-44 181.8 158 61.4
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 9.0e-44 181.0 149 59.1
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.2e-43 180.6 197 54.3
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 2.6e-43 179.5 123 70.7
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 6.5e-42 174.9 122 71.3
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.1e-41 174.1 149 57.0
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 3.2e-41 172.6 126 67.5
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 4.2e-41 172.2 130 68.5
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 7.2e-41 171.4 121 71.1
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 2.7e-40 169.5 125 68.0
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 2.7e-40 169.5 135 64.4
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 3.6e-40 169.1 124 67.7
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 7.9e-40 167.9 134 61.2
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 3.0e-39 166.0 154 62.3
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 7.4e-38 161.4 173 49.7
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 2.4e-36 156.4 125 68.0
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.1e-36 156.0 153 51.6
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 9.0e-36 154.5 140 55.0
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 1.7e-34 150.2 133 61.7
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 5.0e-34 148.7 179 45.8
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 6.5e-34 148.3 131 58.0
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 8.5e-34 147.9 187 43.9
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.4e-33 147.1 140 55.7
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 2.7e-32 142.9 132 61.4
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 7.9e-32 141.4 161 43.5
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.8e-31 140.2 116 61.2
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 2.3e-31 139.8 132 56.8
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.2e-29 133.3 170 42.9
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.1e-28 129.4 109 67.0
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 4.5e-27 125.6 90 67.8
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 3.3e-22 109.4 100 63.0
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 3.1e-20 102.8 137 46.0
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 8.5e-18 94.7 110 49.1
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.0e-10 68.9 78 48.7
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 6.1e-08 62.0 47 63.8
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 6.1e-08 62.0 46 60.9
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 1.0e-07 61.2 46 65.2
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 1.0e-07 61.2 46 65.2
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.2e-06 57.8 46 60.9
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 4.4e-06 55.8 44 61.4


User provided reference genes

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