Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 6.0e-88 328.2 269 100.0
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 4.5e-59 232.3 272 82.0
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 7.0e-52 208.4 267 77.9
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.0e-50 204.5 271 77.9
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.1e-48 195.3 267 77.2
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.0e-47 194.5 265 77.0
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.0e-47 194.5 265 77.0
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.4e-47 194.1 267 73.8
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.8e-47 193.7 265 77.4
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 4.0e-47 192.6 265 77.4
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 5.2e-47 192.2 265 75.1
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 5.2e-47 192.2 267 76.0
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.2e-47 192.2 267 76.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.5e-46 190.7 267 75.3
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 1.5e-46 190.7 268 75.4
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 2.0e-46 190.3 267 76.0
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.0e-46 190.3 267 76.0
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 2.6e-46 189.9 271 65.3
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.6e-46 189.9 265 75.5
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.3e-46 189.5 267 76.0
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 3.3e-46 189.5 267 76.0
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.7e-46 188.7 268 75.4
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.7e-46 188.7 268 75.4
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 5.7e-46 188.7 271 76.0
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 9.7e-46 188.0 272 73.5
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.3e-45 187.6 267 75.7
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 2.2e-45 186.8 267 75.3
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 3.7e-45 186.0 267 75.3
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 3.7e-45 186.0 265 74.0
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 4.8e-45 185.7 264 75.8
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.8e-45 185.7 264 75.8
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 4.8e-45 185.7 265 75.5
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 4.8e-45 185.7 272 47.8
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 6.3e-45 185.3 268 75.4
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 8.2e-45 184.9 266 76.3
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 8.2e-45 184.9 263 76.0
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 8.2e-45 184.9 268 74.6
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.1e-44 184.5 264 75.4
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.1e-44 184.5 267 75.3
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.1e-44 184.5 263 75.7
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.4e-44 184.1 266 74.1
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.4e-44 184.1 264 75.0
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.4e-44 184.1 249 79.9
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 1.4e-44 184.1 265 75.8
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 2.4e-44 183.3 263 76.0
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 2.4e-44 183.3 263 76.0
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 4.1e-44 182.6 266 74.4
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 4.1e-44 182.6 265 70.6
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 5.3e-44 182.2 265 75.1
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 7.0e-44 181.8 271 71.6
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 9.1e-44 181.4 257 77.0
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.2e-43 181.0 266 74.4
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 1.6e-43 180.6 270 74.8
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.6e-43 180.6 265 74.3
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.6e-43 180.6 273 71.8
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 2.0e-43 180.3 265 70.9
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 2.0e-43 180.3 264 73.1
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 2.0e-43 180.3 263 73.8
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 2.0e-43 180.3 263 73.8
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 2.7e-43 179.9 273 68.9
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 2.7e-43 179.9 257 75.5
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.5e-43 179.5 265 74.7
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 5.9e-43 178.7 271 71.2
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 7.7e-43 178.3 267 72.7
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.0e-42 177.9 257 74.3
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.0e-42 177.9 264 73.9
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.0e-42 177.9 264 72.3
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.0e-42 177.9 265 74.0
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.0e-42 177.9 258 74.4
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 1.0e-42 177.9 265 67.9
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.7e-42 177.2 269 74.7
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 1.7e-42 177.2 250 75.2
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.2e-42 176.8 276 73.6
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.9e-42 176.4 251 76.9
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 2.9e-42 176.4 262 73.7
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.9e-42 176.4 253 77.5
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 2.9e-42 176.4 264 73.9
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 2.9e-42 176.4 268 73.9
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.9e-42 176.4 269 74.0
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 3.8e-42 176.0 254 77.2
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 5.0e-42 175.6 279 72.8
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 5.0e-42 175.6 268 75.7
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 5.0e-42 175.6 273 72.9
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 5.0e-42 175.6 268 75.7
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 5.0e-42 175.6 258 73.3
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 6.5e-42 175.3 266 75.6
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 6.5e-42 175.3 265 72.8
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 8.5e-42 174.9 228 85.1
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 1.1e-41 174.5 273 72.9
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 1.1e-41 174.5 273 72.9
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-41 174.1 273 72.5
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.5e-41 174.1 273 72.5
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 1.9e-41 173.7 249 75.9
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 1.9e-41 173.7 268 75.4
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 3.2e-41 172.9 267 73.4
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 3.2e-41 172.9 277 69.3
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 4.2e-41 172.6 266 75.2
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 4.2e-41 172.6 252 75.0
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 4.2e-41 172.6 271 72.7
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 5.5e-41 172.2 250 75.2
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 9.4e-41 171.4 252 75.0
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 9.4e-41 171.4 238 78.6
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 9.4e-41 171.4 266 73.7
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 9.4e-41 171.4 266 69.9
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 1.6e-40 170.6 266 67.7
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 4.7e-40 169.1 249 73.9
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 1.0e-39 167.9 268 73.1
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 1.0e-39 167.9 244 78.7
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.0e-39 167.9 267 72.3
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 1.4e-39 167.5 268 72.8
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.8e-39 167.2 268 72.4
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.8e-39 167.2 268 69.8
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 3.0e-39 166.4 265 69.1
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 3.0e-39 166.4 265 69.1
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 3.0e-39 166.4 265 70.2
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 3.0e-39 166.4 268 72.8
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 5.2e-39 165.6 253 71.9
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 6.8e-39 165.2 278 70.9
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 8.8e-39 164.9 249 75.1
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-38 164.1 268 73.9
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 2.6e-38 163.3 268 72.0
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 7.5e-38 161.8 257 75.1
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 4.8e-37 159.1 255 72.5
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 6.3e-37 158.7 239 77.4
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 8.3e-37 158.3 228 78.5
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.4e-36 157.5 237 78.9
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 2.4e-36 156.8 255 69.4
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.1e-36 156.4 238 78.2
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 9.1e-36 154.8 281 66.2
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 2.7e-35 153.3 262 67.6
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.0e-34 151.4 249 67.5
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.9e-34 149.8 266 69.2
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.0e-34 149.1 235 77.0
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 1.1e-33 147.9 259 69.9
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 3.2e-33 146.4 267 62.2
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.6e-32 144.1 249 70.7
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.6e-32 144.1 277 37.9
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.8e-32 143.3 269 66.9
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 5.2e-31 139.0 225 77.8
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 9.2e-28 128.3 268 55.6
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 9.5e-25 118.2 237 71.3
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.2e-24 117.9 84 66.7
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 8.0e-24 115.2 196 79.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.3e-23 113.6 97 58.8
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 5.2e-23 112.5 84 67.9
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 8.9e-23 111.7 208 76.4
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 8.9e-23 111.7 92 58.7
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.8e-20 104.0 83 65.1
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 2.0e-19 100.5 82 61.0
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.7e-19 100.1 277 61.4
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 4.6e-19 99.4 84 65.5
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.3e-18 97.8 274 60.6
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.3e-18 97.1 92 52.2
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 5.6e-17 92.4 265 51.3
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.4e-12 77.0 53 77.4
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 6.0e-11 72.4 83 48.2
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 3.6e-08 63.2 61 62.3
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 2.3e-07 60.5 65 56.9


User provided reference genes

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