Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 2.3e-116 422.2 202 100.0
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 1.8e-84 316.2 191 82.7
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 8.3e-82 307.4 191 81.2
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 6.6e-47 191.4 169 55.6
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 1.4e-44 183.7 166 51.8
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 1.3e-39 167.2 167 48.5
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 9.0e-36 154.5 167 47.3
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 1.2e-35 154.1 167 47.3
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 4.4e-35 152.1 167 45.5
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.9e-34 149.4 167 46.1
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.1e-33 147.5 167 45.5
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 8.7e-31 137.9 171 44.4
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 4.3e-30 135.6 168 42.3
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 5.6e-30 135.2 191 42.4
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 1.3e-29 134.0 163 41.7
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.3e-29 134.0 168 41.1
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 3.6e-29 132.5 168 41.7
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 4.8e-29 132.1 168 39.3
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 6.9e-28 128.3 169 42.6
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 9.0e-28 127.9 168 39.3
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 1.2e-27 127.5 179 40.8
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 1.2e-27 127.5 148 43.9
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 9.9e-27 124.4 168 39.3
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 9.9e-27 124.4 169 43.2
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 2.9e-26 122.9 169 42.6
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 3.8e-26 122.5 168 41.1
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.1e-25 120.9 166 39.8
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.9e-25 120.2 180 35.0
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 1.9e-25 120.2 170 38.8
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 3.2e-25 119.4 198 38.4
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 4.2e-25 119.0 168 41.1
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 5.4e-25 118.6 168 41.1
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 1.2e-24 117.5 167 35.9
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.2e-24 117.5 170 40.0
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.2e-24 117.5 169 37.3
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.6e-24 117.1 171 35.1
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 1.6e-24 117.1 218 37.2
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 1.6e-24 117.1 194 35.1
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 2.7e-24 116.3 168 40.5
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 4.6e-24 115.5 166 38.6
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 4.6e-24 115.5 189 37.0
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 6.0e-24 115.2 165 41.8
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 7.9e-24 114.8 168 39.3
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 7.9e-24 114.8 181 35.9
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.0e-23 114.4 181 32.6
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 1.0e-23 114.4 179 39.1
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 1.3e-23 114.0 189 36.5
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 1.8e-23 113.6 170 38.2
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 2.3e-23 113.2 169 40.2
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 2.3e-23 113.2 164 42.1
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 3.0e-23 112.8 165 40.6
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 3.0e-23 112.8 168 38.7
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 6.7e-23 111.7 170 35.3
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 8.7e-23 111.3 172 34.9
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 1.1e-22 110.9 197 36.0
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 1.1e-22 110.9 168 38.1
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 1.1e-22 110.9 168 37.5
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 1.1e-22 110.9 141 44.0
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.1e-22 110.9 162 37.0
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 1.5e-22 110.5 169 36.7
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 1.5e-22 110.5 164 39.6
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 1.5e-22 110.5 167 35.9
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 1.9e-22 110.2 171 38.0
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 1.9e-22 110.2 173 37.0
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 3.3e-22 109.4 167 34.7
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 3.3e-22 109.4 165 41.2
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 7.4e-22 108.2 169 34.9
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 7.4e-22 108.2 167 35.3
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 9.6e-22 107.8 174 36.2
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 9.6e-22 107.8 167 38.9
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 1.3e-21 107.5 167 38.9
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 1.3e-21 107.5 167 38.9
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.3e-21 107.5 169 37.9
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 1.3e-21 107.5 172 39.0
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 2.8e-21 106.3 167 34.7
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 2.8e-21 106.3 183 36.1
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 2.8e-21 106.3 170 36.5
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 3.7e-21 105.9 168 34.5
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 4.8e-21 105.5 167 38.3
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 4.8e-21 105.5 180 37.2
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 4.8e-21 105.5 168 36.3
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 6.2e-21 105.1 104 49.0
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 8.1e-21 104.8 165 37.6
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 1.1e-20 104.4 147 39.5
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 1.1e-20 104.4 167 34.7
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 1.4e-20 104.0 203 33.5
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.8e-20 103.6 174 35.6
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 3.1e-20 102.8 188 33.0
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 4.0e-20 102.4 175 35.4
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 4.0e-20 102.4 170 36.5
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 4.0e-20 102.4 169 33.7
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 4.0e-20 102.4 187 32.1
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 6.9e-20 101.7 168 36.9
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 6.9e-20 101.7 176 36.9
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 9.0e-20 101.3 174 32.8
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 9.0e-20 101.3 104 48.1
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 1.2e-19 100.9 184 34.2
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.2e-19 100.9 169 33.1
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 1.5e-19 100.5 190 31.1
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 1.5e-19 100.5 148 37.2
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.0e-19 100.1 173 31.8
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.0e-19 100.1 169 33.1
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 2.6e-19 99.8 147 37.4
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 3.4e-19 99.4 155 37.4
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 3.4e-19 99.4 173 35.3
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.4e-19 99.4 183 34.4
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 3.4e-19 99.4 194 32.5
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 3.4e-19 99.4 174 36.2
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.5e-19 99.0 173 32.4
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.5e-19 99.0 138 41.3
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 4.5e-19 99.0 173 34.7
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 5.8e-19 98.6 167 32.3
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 5.8e-19 98.6 167 33.5
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 5.8e-19 98.6 97 46.4
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 7.6e-19 98.2 167 35.9
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 7.6e-19 98.2 173 34.7
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 7.6e-19 98.2 167 35.9
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 1.0e-18 97.8 112 43.8
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 1.3e-18 97.4 189 30.2
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.3e-18 97.4 146 38.4
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 1.3e-18 97.4 182 34.6
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.7e-18 97.1 172 36.6
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.7e-18 97.1 124 44.4
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 2.9e-18 96.3 109 45.0
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.8e-18 95.9 147 36.7
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.8e-18 95.9 147 36.7
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 3.8e-18 95.9 168 34.5
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 4.9e-18 95.5 167 32.3
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 4.9e-18 95.5 172 34.3
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 8.4e-18 94.7 104 43.3
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 1.4e-17 94.0 144 34.7
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 4.2e-17 92.4 83 50.6
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 4.2e-17 92.4 172 35.5
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 5.5e-17 92.0 103 47.6
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 7.1e-17 91.7 160 31.2
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.1e-16 90.1 120 41.7
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 3.5e-16 89.4 171 34.5
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 3.5e-16 89.4 108 42.6
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 6.0e-16 88.6 97 47.4
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 6.0e-16 88.6 135 32.6
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 7.9e-16 88.2 115 38.3
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 1.8e-15 87.0 88 44.3
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 1.8e-15 87.0 118 39.8
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 3.9e-15 85.9 181 29.3
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 5.1e-15 85.5 88 43.2
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 6.7e-15 85.1 82 47.6
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 8.7e-15 84.7 84 48.8
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 1.9e-14 83.6 120 36.7
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 2.5e-14 83.2 91 46.2
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 7.4e-14 81.6 68 55.9
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 1.3e-13 80.9 132 39.4
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.8e-13 79.7 124 39.5
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 2.8e-13 79.7 106 37.7
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 3.7e-13 79.3 168 31.0
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 6.2e-13 78.6 146 34.9
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 5.3e-12 75.5 103 40.8
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 5.3e-12 75.5 86 45.3
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 9.0e-12 74.7 169 29.6
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 2.0e-11 73.6 149 32.9
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 2.6e-11 73.2 108 34.3
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 3.4e-11 72.8 116 36.2
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 3.4e-11 72.8 147 32.7
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 5.8e-11 72.0 92 37.0
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 5.8e-11 72.0 150 30.0
Lsat_1_v5_gn_5_117240 Lactuca sativa HOM05D003497 ORTHO05D003964 7.6e-11 71.6 85 44.7
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 2.2e-10 70.1 111 36.0
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 3.8e-10 69.3 83 41.0
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 8.4e-10 68.2 79 44.3
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 1.1e-09 67.8 167 29.3
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.9e-09 67.0 82 45.1
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 4.2e-09 65.9 120 35.0
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.2e-08 64.3 145 30.3
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 4.6e-08 62.4 67 43.3
Actinidia02442 Actinidia chinensis HOM05D003497 ORTHO05D003964 1.3e-07 60.8 102 35.3
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 2.3e-07 60.1 83 36.1
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 2.3e-07 60.1 106 32.1
MCO07G198 Micromonas commoda HOM05D003497 ORTHO05D003964 7.4e-06 55.1 69 43.5


User provided reference genes

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