Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 3.0e-54 214.9 107 100.0
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 1.6e-52 209.1 106 96.2
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 91.6
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 9.9e-50 199.9 107 91.6
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 90.7
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 90.7
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 88.8
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 90.7
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 88.8
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 90.7
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 88.8
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 90.7
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 90.7
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 90.7
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 90.7
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 89.7
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 89.7
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 88.8
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 89.7
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 90.7
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 89.7
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 89.7
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 89.7
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 89.7
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 88.8
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 88.8
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 87.9
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 89.7
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 89.7
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 89.7
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 89.7
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 89.7
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 88.8
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 86.9
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 89.7
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 87.9
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 88.8
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 89.7
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 88.8
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 89.7
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 87.9
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 7.1e-48 193.7 106 89.6
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 7.1e-48 193.7 106 89.6
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 7.1e-48 193.7 106 89.6
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 89.7
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 89.7
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 87.9
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 88.8
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 88.8
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 88.8
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 87.9
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 87.9
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 88.8
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 87.9
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 89.7
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 87.9
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 89.7
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 1.2e-47 193.0 107 88.8
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 1.2e-47 193.0 107 88.8
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 1.2e-47 193.0 107 87.9
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 88.8
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 88.8
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 87.9
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 87.9
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 87.9
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 88.8
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 88.8
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 88.8
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 87.9
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 88.8
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 87.9
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 88.8
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 88.8
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 86.9
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 2.7e-47 191.8 105 89.5
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 2.7e-47 191.8 105 89.5
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 87.9
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 86.9
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 86.9
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 86.9
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 86.9
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 4.6e-47 191.0 107 86.0
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 4.6e-47 191.0 107 87.9
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 6.0e-47 190.7 107 86.9
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 7.8e-47 190.3 107 86.0
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 7.8e-47 190.3 107 86.9
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 1.0e-46 189.9 107 87.9
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 1.0e-46 189.9 107 86.0
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 85.0
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 86.0
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 1.3e-46 189.5 105 87.6
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.0
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 86.9
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 6.6e-46 187.2 107 86.0
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 85.0
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 85.0
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 1.1e-45 186.4 106 84.9
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 1.5e-45 186.0 107 82.2
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 1.9e-45 185.7 107 83.2
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.9e-45 185.7 117 82.1
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 1.9e-45 185.7 107 85.0
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 2.5e-45 185.3 107 82.2
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 2.5e-45 185.3 123 78.0
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 4.3e-45 184.5 98 90.8
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 84.1
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 2.8e-44 181.8 107 83.2
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 2.8e-44 181.8 107 83.2
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.7e-44 181.0 107 82.2
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.7e-44 181.0 107 82.2
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.4e-43 179.5 107 81.3
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 1.8e-43 179.1 104 82.7
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 3.1e-43 178.3 107 78.5
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 4.0e-43 177.9 104 81.7
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 4.0e-43 177.9 107 81.3
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 5.2e-43 177.6 107 80.4
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 8.9e-43 176.8 133 69.9
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 2.0e-42 175.6 107 78.5
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 2.6e-42 175.3 105 80.0
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 2.2e-41 172.2 106 76.4
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 2.4e-40 168.7 107 79.4
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 3.2e-40 168.3 104 76.0
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 4.1e-40 167.9 94 86.2
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 5.4e-40 167.5 94 86.2
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 2.3e-38 162.2 107 72.0
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 8.6e-38 160.2 165 55.8
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 7.3e-37 157.1 83 90.4
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 8.1e-36 153.7 107 71.0
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 2.6e-34 148.7 107 72.0
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 62.6
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 4.9e-33 144.4 107 60.7
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 61.7
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.9e-32 142.5 107 61.7
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 3.5e-31 138.3 107 57.9
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 4.6e-31 137.9 106 59.4
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 5.6e-29 131.0 71 87.3
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 5.3e-27 124.4 107 59.8
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 1.2e-26 123.2 107 57.9
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 6.4e-25 117.5 66 87.9
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 1.1e-24 116.7 69 87.0
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 3.5e-23 111.7 93 59.1
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 1.3e-22 109.8 60 93.3
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 1.8e-22 109.4 60 91.7
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 3.0e-22 108.6 60 91.7
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 3.0e-22 108.6 60 91.7
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 2.1e-20 102.4 107 59.8
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 2.1e-20 102.4 107 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 8.1e-20 100.5 105 45.7
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 1.8e-19 99.4 100 47.0
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 1.7e-17 92.8 83 59.0
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 2.2e-17 92.4 98 45.9
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 2.4e-16 89.0 51 86.3
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 7.9e-15 84.0 57 73.7
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 5.6e-13 77.8 47 83.0
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 3.7e-12 75.1 100 35.0
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 6.9e-11 70.9 92 35.9
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 3.4e-10 68.6 36 91.7
Lsat_1_v5_gn_8_45161 Lactuca sativa HOM05D001675 ORTHO05D001808 4.2e-08 61.6 38 81.6
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 6.0e-07 57.8 34 67.6


User provided reference genes

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