Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.0e-302 1041.6 515 100.0
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 6.4e-288 993.4 519 95.6
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 3.3e-276 954.5 517 91.1
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 8.7e-269 929.9 513 89.7
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 3.3e-268 927.9 522 87.2
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.6e-267 925.6 523 87.6
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.4e-266 922.5 508 88.8
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.4e-266 921.8 516 88.4
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 6.9e-266 920.2 514 87.9
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.2e-265 919.5 508 88.4
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.2e-265 919.5 517 87.4
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.5e-265 919.1 515 87.4
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 4.5e-265 917.5 498 90.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 5.8e-265 917.1 499 89.0
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 5.8e-265 917.1 516 87.0
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 7.6e-265 916.8 499 90.4
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.3e-264 916.0 515 88.0
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.3e-264 916.0 515 88.0
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.2e-264 915.2 508 88.2
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 3.8e-264 914.4 521 86.2
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 3.8e-264 914.4 517 87.0
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 3.8e-264 914.4 510 88.2
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.9e-264 914.1 515 87.8
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 6.4e-264 913.7 510 87.8
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.1e-263 912.9 515 86.6
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.1e-263 912.9 515 87.8
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.4e-263 912.5 517 86.7
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.4e-263 912.5 517 86.7
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 3.2e-263 911.4 499 89.6
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 9.3e-263 909.8 514 86.4
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 9.3e-263 909.8 516 86.6
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.2e-262 909.4 514 85.8
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.2e-262 909.4 527 84.8
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 1.2e-262 909.4 517 86.5
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.6e-262 909.1 515 87.0
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 2.1e-262 908.7 501 89.0
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.0e-262 907.1 517 86.3
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 6.0e-262 907.1 518 85.5
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 7.9e-262 906.7 499 89.2
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.8e-261 905.6 499 88.0
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.8e-261 905.6 513 86.4
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.3e-261 905.2 499 87.4
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 6.7e-261 903.7 514 86.0
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 6.7e-261 903.7 545 82.4
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 8.7e-261 903.3 500 88.2
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 8.7e-261 903.3 513 86.0
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 2.5e-260 901.7 499 88.8
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.5e-260 901.7 513 86.0
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 4.3e-260 901.0 513 86.0
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 4.3e-260 901.0 510 86.5
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.3e-260 901.0 513 86.5
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 5.6e-260 900.6 521 85.4
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 9.6e-260 899.8 514 85.0
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 9.6e-260 899.8 514 85.0
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.3e-259 899.4 525 83.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 2.1e-259 898.7 500 87.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.8e-259 898.3 500 87.8
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 2.8e-259 898.3 499 87.0
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 3.7e-259 897.9 514 84.8
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.8e-259 897.5 521 85.0
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 6.2e-259 897.1 538 82.5
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 6.2e-259 897.1 522 83.9
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 6.2e-259 897.1 500 87.2
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 8.1e-259 896.7 513 84.8
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.1e-258 896.3 509 86.4
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 2.4e-258 895.2 520 84.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.4e-258 895.2 512 85.7
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.2e-257 892.9 513 85.8
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 2.6e-257 891.7 501 86.2
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 2.6e-257 891.7 504 85.7
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.4e-257 891.3 516 84.3
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 3.4e-257 891.3 506 85.8
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 5.8e-257 890.6 520 84.0
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 5.8e-257 890.6 520 84.0
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 5.8e-257 890.6 491 88.8
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 9.9e-257 889.8 521 84.8
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 9.9e-257 889.8 521 83.1
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.3e-256 889.4 523 83.2
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.9e-256 888.3 525 82.9
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 4.9e-256 887.5 520 84.0
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 4.9e-256 887.5 520 84.0
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 6.4e-256 887.1 520 84.0
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 8.4e-256 886.7 509 84.3
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.9e-255 885.6 499 86.4
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.4e-255 885.2 516 84.3
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 7.1e-255 883.6 520 83.3
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 7.1e-255 883.6 507 84.8
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 7.1e-255 883.6 523 84.3
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.2e-254 882.9 509 84.5
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.0e-253 879.8 509 83.9
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.3e-253 878.6 509 83.1
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 2.3e-253 878.6 524 81.9
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 6.7e-253 877.1 525 82.3
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.9e-252 875.5 502 85.1
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.6e-251 872.5 524 81.9
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.4e-250 869.4 524 81.3
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 3.1e-250 868.2 524 81.5
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.5e-249 864.4 518 81.7
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 5.8e-249 864.0 509 82.1
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.1e-247 859.8 498 81.7
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.3e-245 852.8 498 81.1
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.9e-245 851.3 511 82.2
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.9e-245 851.3 511 82.2
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.9e-245 851.3 485 83.9
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 4.2e-239 831.2 524 75.6
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 3.6e-238 828.2 513 79.1
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 4.6e-238 827.8 514 80.2
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 6.5e-232 807.4 524 74.0
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 3.0e-229 798.5 563 71.6
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 9.7e-228 793.5 523 73.4
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.4e-226 789.6 523 73.8
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 5.5e-223 777.7 499 74.5
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.2e-222 776.5 506 72.3
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.7e-220 767.7 473 82.5
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.1e-218 763.5 502 72.1
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 7.7e-217 757.3 526 69.2
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.0e-216 756.9 526 68.8
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 3.0e-213 745.3 501 72.7
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 2.6e-212 742.3 495 70.3
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 7.2e-207 724.2 509 73.5
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 3.0e-205 718.8 412 85.2
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.5e-204 716.5 498 74.3
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 6.3e-203 711.1 397 89.2
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.9e-200 702.2 491 67.8
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.6e-198 696.4 499 72.7
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.0e-189 667.2 379 87.9
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.1e-186 657.1 525 60.8
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 6.8e-181 637.9 499 63.3
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.6e-177 626.7 419 77.6
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 3.6e-174 615.5 346 89.0
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 2.0e-172 609.8 344 88.4
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.4e-154 550.4 522 56.7
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 8.7e-152 541.2 491 53.8
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 3.1e-149 532.7 355 76.9
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 4.6e-145 518.8 283 85.9
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.8e-144 516.9 286 85.3
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 7.9e-137 491.5 276 90.2
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.8e-134 483.0 356 71.3
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.2e-132 477.6 510 49.0
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 6.3e-126 455.3 510 48.0
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 5.3e-117 425.6 285 77.2
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 2.0e-92 344.0 172 91.9
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 8.6e-83 312.0 409 40.6
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 8.9e-64 248.8 325 45.8
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.6e-63 247.3 415 40.5
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 4.6e-44 183.3 116 75.0
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 5.3e-40 169.9 93 86.0
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.0e-27 127.5 89 67.4
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 5.6e-26 123.2 79 74.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 9.3e-21 105.9 68 72.1
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.6e-17 95.1 64 65.6
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.5e-13 81.3 125 42.4
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 1.9e-10 71.6 48 64.6
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 3.3e-10 70.9 72 56.9
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 2.6e-07 61.2 35 77.1


User provided reference genes

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