Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 0.0e+00 1558.5 1040 100.0
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 1.0e-239 834.3 1107 59.9
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 4.1e-201 706.1 1182 52.5
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 2.5e-129 467.6 1088 47.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 5.5e-105 386.7 1238 41.9
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 5.7e-102 376.7 808 39.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.5e-99 367.1 1339 40.0
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.1e-92 345.9 729 38.8
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 4.1e-92 344.0 797 37.5
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 2.7e-91 341.3 1269 35.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.8e-87 328.6 1052 36.1
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 9.2e-84 316.2 770 38.1
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 4.5e-83 313.9 1275 38.0
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.9e-82 311.2 749 38.1
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 7.3e-81 306.6 737 36.9
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 9.5e-81 306.2 738 38.1
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.6e-80 304.3 547 43.3
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 8.0e-80 303.1 599 40.4
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.0e-79 302.8 650 39.1
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.8e-79 302.0 746 37.0
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.4e-78 297.4 619 38.0
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 9.8e-78 296.2 810 36.0
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 3.2e-76 291.2 712 37.2
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.5e-75 287.7 780 35.3
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 8.6e-74 283.1 760 35.3
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.5e-73 281.6 628 39.5
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.3e-73 280.0 1010 34.7
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 9.5e-73 279.6 676 38.8
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 9.5e-73 279.6 676 38.8
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.7e-69 268.9 572 38.8
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 6.4e-69 266.9 758 33.8
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.4e-68 265.0 571 37.7
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.4e-63 249.2 1113 31.8
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 2.3e-63 248.4 751 34.1
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 2.9e-61 241.5 567 37.2
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.4e-60 238.4 1016 34.4
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 6.6e-58 230.3 755 33.4
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.2e-56 223.8 684 35.2
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 4.4e-54 217.6 1053 33.5
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.9e-52 212.2 756 31.5
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.2e-51 209.5 1041 30.4
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 2.1e-51 208.8 1047 29.8
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 7.8e-51 206.8 1101 28.9
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 1.0e-50 206.5 1164 26.5
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.1e-49 203.0 451 38.6
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 4.3e-49 201.1 582 31.4
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 7.3e-49 200.3 584 31.5
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 2.8e-48 198.4 387 42.4
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 3.6e-48 198.0 679 32.3
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 5.3e-47 194.1 580 32.4
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.2e-46 193.0 681 32.0
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 2.2e-45 188.7 699 30.9
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.2e-45 188.7 625 32.6
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 4.2e-44 184.5 1037 28.4
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.1e-43 182.2 932 34.4
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 7.9e-43 180.3 694 31.7
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.0e-42 179.9 552 33.5
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.3e-42 179.5 699 30.6
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 3.9e-42 177.9 688 31.1
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 3.9e-42 177.9 714 30.3
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.9e-41 175.6 632 30.5
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 1.9e-41 175.6 584 31.8
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 3.3e-41 174.9 554 31.0
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 4.3e-41 174.5 655 30.2
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.6e-40 172.6 514 33.7
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 4.8e-40 171.0 606 31.8
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.1e-39 169.9 651 31.8
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 3.4e-38 164.9 600 30.2
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 3.4e-38 164.9 572 31.5
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 5.8e-38 164.1 1116 33.4
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 7.6e-38 163.7 1083 29.9
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 9.9e-38 163.3 584 31.8
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.3e-37 162.9 585 32.8
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 2.2e-37 162.2 636 31.4
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 3.8e-37 161.4 672 30.5
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 3.2e-36 158.3 581 32.2
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 4.2e-36 157.9 674 30.9
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 4.2e-36 157.9 556 30.9
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 4.2e-36 157.9 556 30.9
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 7.1e-36 157.1 587 31.0
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 9.3e-36 156.8 556 30.9
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 9.3e-36 156.8 583 31.7
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.2e-35 156.4 586 31.4
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.6e-35 156.0 639 32.2
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 4.6e-35 154.5 594 30.8
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.0e-34 153.3 595 30.6
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 3.0e-34 151.8 548 30.7
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 3.0e-34 151.8 652 29.3
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.1e-34 151.0 680 30.3
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 6.7e-34 150.6 671 29.7
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 8.7e-34 150.2 629 31.5
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.1e-33 149.8 581 31.3
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.5e-33 149.4 578 30.1
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-33 149.4 544 32.4
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.5e-33 149.4 549 32.1
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.9e-33 149.1 561 31.2
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.5e-33 148.7 544 32.4
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.5e-33 148.7 681 30.2
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.3e-32 146.4 543 32.2
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 3.7e-32 144.8 676 30.0
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 8.1e-32 143.7 454 32.2
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 8.1e-32 143.7 629 30.4
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.1e-31 143.3 540 31.7
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 4.0e-31 141.4 649 31.1
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 5.3e-31 141.0 1121 35.0
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.9e-31 140.6 543 31.5
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 1.2e-30 139.8 571 29.9
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 1.2e-30 139.8 635 29.6
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-30 139.4 624 30.0
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 2.0e-30 139.0 666 28.5
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 3.4e-30 138.3 1128 28.9
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.4e-30 138.3 544 31.6
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 4.5e-30 137.9 942 36.3
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 7.6e-30 137.1 557 30.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 6.5e-29 134.0 1036 34.9
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 6.5e-29 134.0 677 29.4
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 8.4e-29 133.7 675 28.4
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 1.1e-28 133.3 730 27.3
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 1.4e-28 132.9 628 29.6
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 7.1e-28 130.6 580 30.0
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 9.3e-28 130.2 533 30.8
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.2e-27 129.8 546 29.3
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.6e-27 129.4 632 28.8
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.7e-27 128.6 500 31.2
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 7.9e-27 127.1 689 28.6
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.8e-26 125.9 698 28.2
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 6.7e-26 124.0 561 29.6
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 6.7e-26 124.0 630 29.0
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 1.9e-25 122.5 537 30.5
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 2.5e-25 122.1 914 35.2
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 5.7e-25 120.9 546 30.0
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 5.7e-25 120.9 532 29.7
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 9.6e-25 120.2 1129 31.4
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.3e-24 119.8 730 27.3
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.6e-24 119.4 653 28.6
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 8.2e-24 117.1 1132 34.5
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 2.4e-23 115.5 637 27.8
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 2.6e-22 112.1 634 27.9
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 1.3e-21 109.8 442 29.6
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 2.9e-21 108.6 622 27.7
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 5.5e-20 104.4 355 33.2
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.7e-19 102.1 672 28.1
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 5.1e-18 97.8 755 26.4
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 6.7e-18 97.4 542 28.0
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 1.1e-17 96.7 538 26.6
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.5e-17 95.5 295 34.9
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 4.3e-17 94.7 467 29.8
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.8e-16 92.0 564 25.9
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.8e-16 92.0 1025 39.8
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.8e-16 91.3 584 25.9
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.9e-15 87.4 143 38.5
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.9e-15 87.4 143 38.5
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 1.2e-14 86.7 658 25.5
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.4e-14 85.1 670 26.6
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-12 80.1 1200 36.9
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.6e-11 76.3 288 33.3
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.1e-11 74.3 340 30.3
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.0e-10 73.6 620 25.8
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.4e-07 63.2 627 23.1
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 9.1e-07 60.5 274 29.2
HanXRQChr05g0143621 Helianthus annuus HOM05D003962 ORTHO05D004714 9.1e-07 60.5 45 66.7


User provided reference genes

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