Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 0.0e+00 1140.2 995 100.0
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 7.2e-203 711.8 779 76.3
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 5.6e-163 579.3 850 65.6
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 1.4e-73 282.3 851 48.6
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 5.9e-72 276.9 574 45.6
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 2.2e-71 275.0 833 50.4
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 8.5e-71 273.1 532 45.5
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-69 269.2 538 40.7
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 4.0e-68 264.2 797 50.8
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 1.3e-66 259.2 481 48.9
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 2.4e-65 255.0 812 52.5
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 4.5e-64 250.8 825 49.9
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.9e-62 245.4 502 41.4
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 3.2e-62 244.6 497 56.3
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-61 242.7 492 41.9
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 3.0e-60 238.0 834 49.5
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 5.2e-60 237.3 537 38.4
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 2.0e-59 235.3 508 48.4
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 2.6e-59 235.0 498 54.6
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 3.5e-56 224.6 837 46.8
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 5.9e-56 223.8 821 51.3
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 7.7e-56 223.4 506 54.0
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 1.1e-54 219.5 492 42.5
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 1.5e-54 219.2 488 46.1
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 1.9e-54 218.8 488 41.4
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 1.2e-53 216.1 850 46.2
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 4.7e-53 214.2 524 50.8
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 4.7e-53 214.2 548 36.5
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 8.0e-53 213.4 497 51.9
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 1.5e-51 209.1 531 41.2
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 5.7e-51 207.2 567 38.4
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 9.8e-51 206.5 486 54.3
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 3.7e-50 204.5 558 32.6
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 3.7e-50 204.5 503 48.9
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 8.3e-50 203.4 502 46.4
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 1.6e-48 199.1 558 36.9
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 1.0e-47 196.4 529 39.1
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 1.0e-47 196.4 529 39.1
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 2.9e-47 194.9 494 50.2
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 7.3e-46 190.3 540 28.7
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 1.2e-45 189.5 475 52.0
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 4.7e-45 187.6 843 22.1
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 3.0e-44 184.9 475 51.6
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 1.2e-43 183.0 338 66.9
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 7.5e-43 180.3 508 39.4
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 1.7e-42 179.1 510 50.2
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 2.9e-42 178.3 506 49.6
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 1.6e-40 172.6 250 38.0
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 2.0e-40 172.2 507 39.4
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 2.0e-40 172.2 664 31.6
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.7e-40 171.8 801 48.4
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.0e-39 169.9 506 27.1
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 2.3e-39 168.7 350 51.4
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 2.5e-38 165.2 233 40.8
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 3.3e-38 164.9 233 40.8
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 3.3e-38 164.9 233 40.8
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.8e-37 161.8 797 48.3
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 3.1e-36 158.3 215 39.5
CSS0048267 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 7.5e-35 153.7 455 43.7
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 2.2e-34 152.1 491 44.6
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 3.5e-32 144.8 488 48.0
Peaxi162Scf00241g00015 Petunia axillaris HOM05D003975 ORTHO05D009762 1.1e-30 139.8 442 49.5
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 1.1e-30 139.8 487 47.4
CSS0004960 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 6.2e-29 134.0 131 48.9
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 8.9e-28 130.2 491 45.2
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 1.5e-27 129.4 507 35.9
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 1.7e-23 115.9 167 41.3
BcaNung03570 Brassica carinata HOM05D003975 ORTHO05D009762 4.7e-21 107.8 233 30.0
Nitab4.5_0002556g0070 Nicotiana tabacum HOM05D003975 ORTHO05D009762 6.2e-21 107.5 108 48.1
HPP92_003270 Vanilla planifolia HOM05D003975 ORTHO05D009762 5.8e-19 100.9 229 31.4
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 2.2e-18 99.0 124 40.3
BcaNung03569 Brassica carinata HOM05D003975 ORTHO05D009762 5.4e-17 94.4 145 32.4
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 1.2e-16 93.2 530 30.6
CsaV3_3G016180 Cucumis sativus L. HOM05D003975 ORTHO05D009762 2.1e-16 92.4 389 52.4
Aqoxy6G00092 Aquilegia oxysepala HOM05D003975 ORTHO05D009762 4.6e-16 91.3 185 31.4
Oeu023215.2 Olea europaea HOM05D003975 ORTHO05D009762 3.9e-15 88.2 126 38.9
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 2.4e-12 79.0 141 31.2
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 3.1e-12 78.6 120 39.2
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 9.0e-12 77.0 109 35.8
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 1.5e-11 76.3 162 32.1
Os10g0116000 Oryza sativa ssp. japonica HOM05D003975 ORTHO05D009762 1.5e-11 76.3 171 29.2
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 7.6e-11 73.9 141 30.5
Thecc.08G050100 Theobroma cacao HOM05D000001 ORTHO05D009837 1.3e-10 73.2 184 30.4
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 4.9e-10 71.2 142 29.6
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 4.2e-09 68.2 207 22.2
TPR.G29077 Trifolium pratense HOM05D008684 ORTHO05D010796 5.4e-09 67.8 217 22.1
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 2.1e-08 65.9 169 22.5
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 3.5e-08 65.1 220 24.1
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 3.5e-08 65.1 104 33.7
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 3.5e-08 65.1 180 25.6
ATR0665G502 Amborella trichopoda HOM05D000424 ORTHO05D008586 6.0e-08 64.3 131 28.2
Prupe.1G360000 Prunus persica HOM05D000001 ORTHO05D009837 6.0e-08 64.3 189 30.2
SalBow4G0419 Salvia bowleyana HOM05D007455 ORTHO05D009431 6.0e-08 64.3 175 28.6
EL10Ac7g15952 Beta vulgaris HOM05D000970 ORTHO05D000788 1.3e-07 63.2 157 26.8
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 1.7e-07 62.8 142 27.5
CAN.G1476.6 Capsicum annuum HOM05D000424 ORTHO05D000355 1.7e-07 62.8 204 25.5
PGR142G1382 Punica granatum HOM05D000001 ORTHO05D000003 3.0e-07 62.0 168 20.2
Ah.08g214900 Amaranthus hybridus HOM05D007197 ORTHO05D009064 3.9e-07 61.6 157 26.8
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 5.1e-07 61.2 104 32.7
Haze_22690 Corylus avellana HOM05D000001 ORTHO05D009837 5.1e-07 61.2 158 32.3
Duzib235G0042 Durio zibethinus HOM05D002986 ORTHO05D007611 5.1e-07 61.2 160 25.6
Lsat_1_v5_gn_3_56000 Lactuca sativa HOM05D005622 ORTHO05D002854 6.6e-07 60.8 137 24.8
Sc04g0001610 Simmondsia chinensis HOM05D000001 ORTHO05D009144 6.6e-07 60.8 176 28.4
SGA_v2.0_scaffold165G38282 Striga asiatica HOM05D000424 ORTHO05D000355 8.7e-07 60.5 130 26.2
Migut.N00201 Erythranthe guttata HOM05D000424 ORTHO05D000355 1.1e-06 60.1 147 24.5
MSTRG.9202 Avicennia marina HOM05D000001 ORTHO05D000003 1.5e-06 59.7 207 24.2
CsaV3_1G012580 Cucumis sativus L. HOM05D002986 ORTHO05D007611 1.5e-06 59.7 198 21.7
Zm00001eb191870 Zea mays HOM05D011046 ORTHO05D013342 1.5e-06 59.7 178 25.8
Zm00001eb121340 Zea mays HOM05D011046 ORTHO05D013342 1.9e-06 59.3 143 28.0
Zm00001eb272070 Zea mays HOM05D011046 ORTHO05D013342 1.9e-06 59.3 178 25.3
Zm00001eb324030 Zea mays HOM05D011046 ORTHO05D013342 1.9e-06 59.3 178 25.3
Zm00001eb336430 Zea mays HOM05D011046 ORTHO05D013342 1.9e-06 59.3 178 25.3
Zm00001eb398710 Zea mays HOM05D011046 ORTHO05D013342 1.9e-06 59.3 143 28.0
Zm00001eb427360 Zea mays HOM05D011046 ORTHO05D013342 1.9e-06 59.3 178 25.3
Zm00001eb442860 Zea mays HOM05D011046 ORTHO05D013342 1.9e-06 59.3 178 25.3
Actinidia40130 Actinidia chinensis HOM05D000424 ORTHO05D000355 2.5e-06 58.9 149 25.5
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 2.5e-06 58.9 136 26.5
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 2.5e-06 58.9 203 26.6
MSTRG.7361 Avicennia marina HOM05D002986 ORTHO05D007611 4.3e-06 58.2 203 23.2
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 4.3e-06 58.2 215 20.5
CSS0000084 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 5.6e-06 57.8 135 27.4
FvH4_7g02120 Fragaria vesca HOM05D005973 ORTHO05D007285 5.6e-06 57.8 161 28.6
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 5.6e-06 57.8 179 22.3
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 7.3e-06 57.4 91 34.1
C05p24510 Brassica napus HOM05D005622 ORTHO05D002854 7.3e-06 57.4 91 33.0
BolC5t31185H Brassica oleracea HOM05D005622 ORTHO05D002854 7.3e-06 57.4 91 33.0
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 7.3e-06 57.4 103 34.0
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 7.3e-06 57.4 201 23.4
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 9.6e-06 57.0 241 24.5
HanXRQChr12g0375311 Helianthus annuus HOM05D005622 ORTHO05D002854 9.6e-06 57.0 140 27.1
MBI04_g28025_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 9.6e-06 57.0 136 27.9
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 9.6e-06 57.0 87 33.3


User provided reference genes

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