Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 8.4e-33 142.9 63 100.0
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 3.2e-24 114.4 63 82.5
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 8.5e-17 89.7 59 66.1
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 8.5e-17 89.7 59 66.1
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 1.9e-16 88.6 51 78.4
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 3.2e-16 87.8 62 59.7
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 4.2e-16 87.4 58 65.5
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 4.2e-16 87.4 58 65.5
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 4.2e-16 87.4 58 65.5
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.6e-15 85.5 54 64.8
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.7e-15 84.7 54 68.5
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.7e-15 84.7 54 68.5
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 2.7e-15 84.7 54 64.8
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 4.6e-15 84.0 58 63.8
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 4.6e-15 84.0 54 64.8
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 4.6e-15 84.0 54 64.8
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 6.1e-15 83.6 54 64.8
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 6.1e-15 83.6 58 60.3
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 1.0e-14 82.8 54 66.7
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 1.0e-14 82.8 54 66.7
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 1.3e-14 82.4 54 63.0
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 1.3e-14 82.4 54 64.8
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.8e-14 82.0 54 63.0
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 2.3e-14 81.6 63 58.7
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.3e-14 81.6 54 64.8
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 3.0e-14 81.3 58 60.3
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.9e-14 80.9 54 64.8
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 3.9e-14 80.9 58 60.3
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 3.9e-14 80.9 54 61.1
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.9e-14 80.9 54 63.0
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 3.9e-14 80.9 58 60.3
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 5.1e-14 80.5 54 61.1
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 5.1e-14 80.5 54 64.8
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 8.7e-14 79.7 54 59.3
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 8.7e-14 79.7 54 63.0
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 8.7e-14 79.7 58 60.3
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.1e-13 79.3 54 66.7
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.1e-13 79.3 54 64.8
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 1.5e-13 79.0 58 62.1
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 1.5e-13 79.0 59 59.3
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.5e-13 79.0 54 61.1
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.9e-13 78.6 54 64.8
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 1.9e-13 78.6 54 63.0
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 1.9e-13 78.6 54 61.1
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.9e-13 78.6 59 59.3
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 2.5e-13 78.2 54 63.0
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 2.5e-13 78.2 54 63.0
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 2.5e-13 78.2 56 58.9
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 2.5e-13 78.2 54 63.0
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 2.5e-13 78.2 54 64.8
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 3.3e-13 77.8 54 61.1
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 3.3e-13 77.8 54 66.7
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 4.3e-13 77.4 54 63.0
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 5.7e-13 77.0 55 63.6
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 5.7e-13 77.0 54 63.0
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 7.4e-13 76.6 54 61.1
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 7.4e-13 76.6 61 52.5
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 7.4e-13 76.6 54 63.0
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 7.4e-13 76.6 54 63.0
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 9.7e-13 76.3 58 58.6
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 9.7e-13 76.3 58 58.6
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 9.7e-13 76.3 54 63.0
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 9.7e-13 76.3 54 57.4
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 1.3e-12 75.9 58 56.9
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 1.3e-12 75.9 53 62.3
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.3e-12 75.9 53 62.3
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.3e-12 75.9 53 62.3
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.3e-12 75.9 53 62.3
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 1.3e-12 75.9 54 63.0
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 1.3e-12 75.9 53 62.3
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 1.6e-12 75.5 55 63.6
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 1.6e-12 75.5 58 56.9
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.6e-12 75.5 56 60.7
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 2.2e-12 75.1 54 59.3
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 2.2e-12 75.1 54 61.1
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 2.8e-12 74.7 54 63.0
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 2.8e-12 74.7 54 61.1
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 2.8e-12 74.7 55 63.6
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.8e-12 74.7 54 61.1
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 2.8e-12 74.7 58 58.6
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 3.7e-12 74.3 54 61.1
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 3.7e-12 74.3 54 61.1
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 3.7e-12 74.3 54 57.4
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 4.8e-12 73.9 58 56.9
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 4.8e-12 73.9 58 55.2
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 6.3e-12 73.6 56 62.5
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 6.3e-12 73.6 53 58.5
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 6.3e-12 73.6 54 61.1
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 8.2e-12 73.2 54 59.3
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 8.2e-12 73.2 54 61.1
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 1.1e-11 72.8 58 56.9
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 1.1e-11 72.8 58 56.9
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.1e-11 72.8 54 61.1
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 1.1e-11 72.8 54 61.1
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 1.4e-11 72.4 54 59.3
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.8e-11 72.0 54 61.1
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.8e-11 72.0 54 57.4
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 1.8e-11 72.0 54 53.7
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 2.4e-11 71.6 58 55.2
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.4e-11 71.6 54 57.4
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 3.1e-11 71.2 54 59.3
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 3.1e-11 71.2 54 55.6
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 3.1e-11 71.2 54 59.3
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 4.1e-11 70.9 58 55.2
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 4.1e-11 70.9 54 53.7
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 6.9e-11 70.1 55 58.2
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 9.1e-11 69.7 51 58.8
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 9.1e-11 69.7 51 58.8
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 9.1e-11 69.7 51 58.8
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 9.1e-11 69.7 54 55.6
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 9.1e-11 69.7 55 60.0
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.2e-10 69.3 54 53.7
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.5e-10 68.9 54 57.4
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.5e-10 68.9 54 57.4
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.5e-10 68.9 54 57.4
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.0e-10 68.6 54 59.3
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 2.6e-10 68.2 58 51.7
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 2.6e-10 68.2 52 53.8
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 5.9e-10 67.0 54 53.7
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 2.2e-09 65.1 60 50.0
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 3.8e-09 64.3 54 51.9
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 8.5e-09 63.2 41 65.9
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 2.7e-07 58.2 53 52.8
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 4.6e-07 57.4 44 54.5
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 6.7e-06 53.5 49 49.0


User provided reference genes

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